Contacts of the helix formed by residues 1933 - 1984 (chain B) in PDB entry 6X34
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1933 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1835B VAL* 4.9 11.2 - - + -
1836B GLU* 3.9 34.8 - - + +
1931B LYS 4.6 1.6 - - - +
1932B LEU* 1.3 95.7 - - + +
1934B GLU* 1.3 64.5 + - - +
1935B SER* 3.5 4.7 - - - +
1936B VAL* 3.3 23.7 - - + +
1937B LYS* 3.1 16.4 - - - +
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Residues in contact with GLU1934 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1933B PRO* 1.3 74.3 - - - +
1935B SER* 1.3 61.5 + - - +
1937B LYS* 3.1 3.6 + - - -
1938B LEU* 2.9 25.8 + - - +
2112B VAL 5.8 2.5 - - - +
2114B SER* 5.4 9.6 - - - +
2117B LEU* 3.2 25.8 - - + +
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Residues in contact with SER1935 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1836B GLU* 5.7 2.4 - - - +
1840B VAL* 3.6 29.6 - - - +
1933B PRO* 3.5 3.9 - - - +
1934B GLU* 1.3 78.3 - - - +
1936B VAL* 1.3 57.9 + - - +
1938B LEU* 3.2 12.4 + - - +
1939B GLN* 2.9 25.5 + - - +
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Residues in contact with VAL1936 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1836B GLU* 4.8 3.4 - - - -
1839B PHE* 3.6 28.0 - - + +
1840B VAL* 3.6 27.1 - - + +
1843B LEU* 4.1 10.3 - - + -
1932B LEU* 3.5 35.2 - - + -
1933B PRO* 3.3 24.5 - - + +
1935B SER* 1.3 73.3 - - - +
1937B LYS* 1.3 64.2 + - - +
1939B GLN* 3.4 7.7 - - - +
1940B MET* 2.9 35.3 + - + +
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Residues in contact with LYS1937 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1930B MET 5.0 4.0 + - - -
1932B LEU* 3.7 36.9 + - + +
1933B PRO 3.1 18.6 - - - +
1934B GLU* 3.1 11.3 + - - +
1936B VAL* 1.3 80.6 - - - +
1938B LEU* 1.3 57.7 + - - +
1940B MET* 3.3 5.3 + - + +
1941B CYS* 2.9 28.5 + - - +
2106B TRP* 3.5 69.3 - - + +
2117B LEU* 3.6 17.0 - - + -
2121B MET* 6.1 0.2 - - - +
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Residues in contact with LEU1938 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1934B GLU 2.9 12.6 + - - +
1935B SER* 3.5 12.3 - - - +
1937B LYS* 1.3 75.1 - - - +
1939B GLN* 1.3 61.6 + - + +
1941B CYS* 3.3 9.3 + - + +
1942B ASN* 2.9 31.3 + - + +
2116B GLU* 4.9 14.6 - - + +
2117B LEU* 4.0 25.2 - - + +
2120B ALA* 5.5 6.7 - - + -
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Residues in contact with GLN1939 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1840B VAL* 5.6 2.7 - - + +
1843B LEU* 4.2 28.5 - - + +
1844B LYS* 5.3 9.2 - - + +
1847B SER* 4.4 4.3 + - - +
1935B SER 2.9 13.3 + - - +
1936B VAL* 3.4 13.9 - - - +
1937B LYS 3.2 0.2 - - - -
1938B LEU* 1.3 81.9 - - + +
1940B MET* 1.3 58.2 + - - +
1942B ASN* 3.2 6.8 + - - +
1943B LEU* 2.9 31.7 + - + +
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Residues in contact with MET1940 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1843B LEU* 3.7 31.6 - - + -
1867B ILE* 3.6 31.6 - - + -
1927B LEU* 3.9 18.4 - - + +
1928B LEU* 4.5 17.9 - - + -
1932B LEU* 6.1 3.4 - - + -
1936B VAL* 2.9 22.2 + - + +
1937B LYS* 3.8 4.9 - - + +
1939B GLN* 1.3 74.8 - - - +
1941B CYS* 1.3 60.7 + - - +
1943B LEU* 3.3 16.2 + - + +
1944B LEU* 2.9 40.0 + - + +
2106B TRP* 4.0 20.9 - - + -
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Residues in contact with CYS1941 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1937B LYS 2.9 14.1 + - - +
1938B LEU* 3.4 13.2 - - - +
1940B MET* 1.3 77.4 - - - +
1942B ASN* 1.3 56.6 + - - +
1944B LEU* 3.3 1.9 + - - -
1945B GLU* 2.9 28.4 + - - +
2103B VAL* 6.3 0.2 - - - -
2106B TRP* 4.9 6.0 - - + -
2117B LEU* 5.7 1.3 - - + +
2120B ALA* 3.5 46.7 - - + -
2121B MET* 3.8 14.6 - - + -
2124B LEU* 3.2 30.8 - - - +
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Residues in contact with ASN1942 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1728B ARG* 4.0 26.4 + - - +
1847B SER* 4.1 19.6 + - - -
1938B LEU* 2.9 20.5 + - + +
1939B GLN* 3.2 7.4 + - - +
1941B CYS* 1.3 76.3 - - - +
1943B LEU* 1.3 60.5 + - - +
1945B GLU* 3.3 8.0 + - - +
1946B TYR* 2.9 30.8 + - - +
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Residues in contact with LEU1943 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1843B LEU* 4.7 12.6 - - + +
1846B VAL* 4.9 11.4 - - + -
1847B SER* 3.3 31.2 - - - +
1850B LEU* 3.9 28.3 - - + -
1863B ILE* 5.8 3.8 - - + -
1867B ILE* 4.8 9.0 - - + -
1939B GLN* 2.9 10.9 + - + +
1940B MET* 3.6 36.6 - - + +
1942B ASN* 1.3 78.5 - - - +
1944B LEU* 1.3 59.1 + - + +
1946B TYR* 3.3 9.4 + - + +
1947B PHE* 2.9 45.8 + - + -
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Residues in contact with LEU1944 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1867B ILE* 5.4 12.1 - - + -
1928B LEU* 5.5 7.0 - - + -
1940B MET* 2.9 26.6 + - + +
1941B CYS* 5.1 0.9 - - - -
1943B LEU* 1.3 76.0 - - + +
1945B GLU* 1.3 57.9 + - - +
1947B PHE* 3.3 22.4 + - + +
1948B CYS* 2.9 28.6 + - - +
2095B LEU* 5.6 6.0 - - + +
2098B LEU* 5.4 5.4 - - + -
2099B VAL* 3.9 40.8 - - + -
2102B THR* 4.9 6.3 - - - +
2103B VAL* 5.6 3.1 - - + -
2106B TRP* 5.5 10.5 - - + -
2124B LEU* 3.6 24.4 - - + +
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Residues in contact with GLU1945 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1941B CYS* 2.9 18.9 + - - +
1942B ASN* 3.6 10.1 - - - +
1944B LEU* 1.3 77.9 - - - +
1946B TYR* 1.3 57.0 + - - +
1948B CYS* 3.3 6.2 + - - +
1949B ASP* 2.9 39.1 + - - +
2124B LEU* 4.0 13.4 - - + +
2127B ARG* 5.7 8.3 - - - +
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Residues in contact with TYR1946 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731B LEU* 5.7 8.3 - - + -
1850B LEU* 2.9 55.7 + - + +
1851B VAL* 3.6 39.6 + - + -
1853B GLY* 4.5 4.2 + - - -
1942B ASN* 2.9 22.3 + - - +
1943B LEU* 3.6 8.7 - - + +
1945B GLU* 1.3 76.1 - - - +
1947B PHE* 1.3 65.7 + + - +
1949B ASP* 3.3 11.5 + - + +
1950B GLN* 2.9 68.4 + - + +
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Residues in contact with PHE1947 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1764B PRO* 4.7 30.5 - - + +
1765B GLY* 6.3 1.1 - - - -
1850B LEU* 3.6 33.0 - - + -
1860B VAL* 6.3 3.1 - - + -
1863B ILE* 4.0 21.1 - - + -
1864B LEU* 5.7 4.9 - - + -
1867B ILE* 4.8 15.0 - - + -
1943B LEU* 2.9 31.9 + - + -
1944B LEU* 3.6 23.6 - - + +
1946B TYR* 1.3 86.4 - + - +
1948B CYS* 1.3 56.5 + - - +
1950B GLN* 3.3 7.4 + - + +
1951B GLU* 2.9 28.9 + - - +
2095B LEU* 4.7 17.5 - - + -
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Residues in contact with CYS1948 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1944B LEU 2.9 17.0 + - - +
1945B GLU* 3.3 7.8 + - - +
1947B PHE* 1.3 75.6 - - - +
1949B ASP* 1.3 57.2 + - - +
1951B GLU* 3.3 13.0 + - - +
1952B LEU* 2.9 30.8 + - - +
2095B LEU* 5.4 8.0 - - + +
2124B LEU* 5.5 7.0 - - + -
2127B ARG* 3.9 48.2 - - - +
2128B GLN* 5.0 4.7 - - + -
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Residues in contact with ASP1949 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731B LEU* 6.0 2.4 - - - +
1734B TYR* 5.0 6.3 + - - +
1945B GLU* 2.9 21.6 + - - +
1946B TYR* 3.3 12.9 + - + +
1948B CYS* 1.3 76.9 - - - +
1950B GLN* 1.3 57.5 + - + +
1952B LEU* 3.3 5.5 + - - +
1953B GLN* 2.9 29.4 + - - +
2127B ARG* 2.5 41.2 + - - +
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Residues in contact with GLN1950 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731B LEU* 5.9 3.4 - - - +
1764B PRO* 5.8 0.7 - - + -
1765B GLY* 5.1 21.7 - - - +
1946B TYR* 2.9 66.1 + - + +
1947B PHE* 3.6 9.0 - - + +
1949B ASP* 1.3 77.3 - - + +
1951B GLU* 1.3 56.4 + - - +
1953B GLN* 3.3 25.8 + - - +
1954B HIS* 2.9 29.6 + - - +
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Residues in contact with GLU1951 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1761B HIS* 5.5 3.5 - - - -
1764B PRO* 5.5 9.8 - - + +
1947B PHE 2.9 16.4 + - - +
1948B CYS* 3.6 10.2 - - - +
1950B GLN* 1.3 75.8 - - - +
1952B LEU* 1.3 59.2 + - - +
1954B HIS* 3.3 10.1 + - + +
1955B ARG* 2.9 54.0 + - - +
2042B HIS* 3.9 16.2 + - + +
2095B LEU* 4.2 28.5 - - - +
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Residues in contact with LEU1952 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1734B TYR* 3.3 34.3 - - + +
1948B CYS* 2.9 20.9 + - - +
1949B ASP* 3.6 6.5 - - - +
1951B GLU* 1.3 75.7 - - - +
1953B GLN* 1.3 57.9 + - - +
1955B ARG* 3.3 21.6 + - - +
1956B VAL* 2.9 38.9 + - + +
2127B ARG* 4.3 16.6 - - - +
2134B GLU* 3.6 37.9 - - + +
2135B LEU* 4.7 2.9 - - + +
2138B ALA* 4.1 17.9 - - + -
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Residues in contact with GLN1953 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731B LEU* 6.1 1.2 - - - +
1734B TYR* 4.0 30.5 - - + -
1769B THR* 3.8 15.8 + - - +
1770B THR* 4.9 2.5 - - - +
1771B SER* 3.0 37.7 + - - +
1949B ASP 2.9 17.3 + - - +
1950B GLN* 3.6 29.2 + - - +
1952B LEU* 1.3 77.0 - - - +
1954B HIS* 1.3 57.0 + - - +
1956B VAL* 3.3 2.6 + - - +
1957B GLU* 2.9 30.1 + - + +
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Residues in contact with HIS1954 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1745B ILE* 4.6 16.9 - - + +
1746B THR 3.5 25.0 + - - -
1747B LEU* 4.8 7.4 + - - -
1767B GLY* 5.0 15.2 - - - -
1768B VAL 4.7 12.7 + - - +
1950B GLN 2.9 17.0 + - - +
1951B GLU* 3.7 9.9 - - + +
1953B GLN* 1.3 78.5 - - - +
1955B ARG* 1.3 60.6 + - + +
1957B GLU* 3.3 7.5 + - - +
1958B SER* 2.9 29.0 + - - -
2042B HIS* 5.9 7.0 - + - -
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Residues in contact with ARG1955 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1951B GLU* 2.9 41.0 + - - +
1952B LEU* 3.6 31.4 - - - +
1953B GLN 3.3 0.2 - - - -
1954B HIS* 1.3 78.7 - - - +
1956B VAL* 1.3 58.9 + - + +
1958B SER* 3.3 5.7 + - - -
1959B LEU* 2.9 30.4 + - + +
2039B LEU* 4.8 20.1 - - + +
2042B HIS* 3.2 33.5 + - + +
2043B CYS* 4.6 21.6 - - - +
2131B GLY* 5.6 4.8 + - - -
2135B LEU* 4.6 26.5 - - - +
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Residues in contact with VAL1956 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1734B TYR* 4.2 29.4 - - + +
1736B VAL* 5.3 4.7 - - + -
1952B LEU* 2.9 39.1 + - + +
1953B GLN* 3.7 6.5 - - - +
1954B HIS 3.3 0.2 - - - -
1955B ARG* 1.3 77.5 - - + +
1957B GLU* 1.3 59.0 + - - +
1959B LEU* 3.3 10.0 + - + +
1960B ALA* 2.9 28.4 + - + +
2135B LEU* 5.8 5.6 - - + +
2138B ALA* 4.1 16.8 - - + +
2139B LEU* 6.6 0.2 - - + -
2142B ALA* 4.3 15.7 - - + -
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Residues in contact with GLU1957 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1736B VAL* 4.9 6.4 - - + +
1742B THR* 5.3 1.6 - - - +
1745B ILE* 6.1 1.3 - - - -
1768B VAL 5.9 1.3 - - - +
1770B THR* 3.2 39.1 - - + +
1953B GLN* 2.9 17.4 + - + +
1954B HIS* 3.7 9.0 - - - +
1955B ARG 3.3 0.2 - - - -
1956B VAL* 1.3 78.9 - - - +
1958B SER* 1.3 58.0 + - - +
1960B ALA* 3.3 7.4 + - - +
1961B ALA* 2.9 28.8 + - - +
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Residues in contact with SER1958 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1745B ILE* 4.2 7.4 + - - +
1746B THR* 3.1 40.9 - - - -
1747B LEU* 3.3 11.1 + - - +
1954B HIS* 2.9 21.1 + - - -
1955B ARG* 3.7 7.2 - - - -
1957B GLU* 1.3 75.4 - - - +
1959B LEU* 1.3 58.1 + - - +
1961B ALA* 3.3 7.1 + - - +
1962B PHE* 2.9 29.5 + - - +
1965B ARG* 5.2 0.9 + - - -
2035B PHE* 4.4 8.5 - - - -
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Residues in contact with LEU1959 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1955B ARG* 2.9 19.6 + - + +
1956B VAL* 3.7 9.0 - - + +
1958B SER* 1.3 76.4 - - - +
1960B ALA* 1.3 59.5 + - + +
1962B PHE* 3.4 8.1 + - + +
1963B ALA* 2.9 29.6 + - + +
2035B PHE* 4.6 9.8 - - + -
2039B LEU* 3.7 29.8 - - + -
2135B LEU* 5.7 9.0 - - + -
2139B LEU* 4.5 13.7 - - + -
3650B LEU* 3.6 28.5 - - + -
3653B TYR* 4.4 26.2 - - + -
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Residues in contact with ALA1960 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1736B VAL* 3.8 34.5 - - + -
1956B VAL* 2.9 18.7 + - + +
1957B GLU 3.6 4.3 - - - +
1958B SER 3.3 0.2 - - - -
1959B LEU* 1.3 78.7 - - + +
1961B ALA* 1.3 60.2 + - - +
1963B ALA* 3.3 6.2 + - - +
1964B GLU* 2.9 29.8 + - - +
2144B THR* 4.7 10.7 + - - +
3650B LEU* 5.3 9.0 - - + -
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Residues in contact with ALA1961 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1736B VAL* 5.6 1.9 - - - +
1742B THR* 3.7 26.5 - - - +
1743B ARG* 4.2 13.9 - - + +
1745B ILE 4.8 3.4 - - - +
1957B GLU 2.9 16.5 + - - +
1958B SER* 3.7 7.2 - - - +
1960B ALA* 1.3 77.0 - - - +
1962B PHE* 1.3 62.5 + - - +
1964B GLU* 3.2 7.3 + - - +
1965B ARG* 3.0 34.8 + - - +
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Residues in contact with PHE1962 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1958B SER 2.9 16.7 + - - +
1959B LEU* 3.7 5.4 - - + +
1961B ALA* 1.3 75.4 - - - +
1963B ALA* 1.3 61.2 + - + +
1965B ARG* 3.1 32.7 - - - +
1966B TYR* 2.9 44.3 + + + +
2031B ASP* 4.5 7.9 - - + -
2032B LEU* 3.9 36.6 - - + -
2035B PHE* 3.4 66.2 - + + -
3649B PHE* 5.4 5.4 - + - -
3653B TYR* 5.9 2.7 - + - -
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Residues in contact with ALA1963 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1959B LEU* 2.9 19.0 + - + +
1960B ALA* 3.7 7.6 - - - +
1961B ALA 3.3 0.2 - - - -
1962B PHE* 1.3 80.2 - - + +
1964B GLU* 1.3 58.3 + - - +
1966B TYR* 3.8 3.4 - - - +
1967B VAL* 2.9 33.9 + - - +
3646B CYS* 4.9 5.8 - - - +
3649B PHE* 3.6 34.2 - - + +
3650B LEU* 4.5 13.7 - - + -
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Residues in contact with GLU1964 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1738B LEU* 5.8 7.6 - - + -
1960B ALA 2.9 17.1 + - - +
1961B ALA* 3.2 8.3 + - - +
1963B ALA* 1.3 75.1 - - - +
1965B ARG* 1.3 63.1 + - - +
1967B VAL* 3.1 11.4 - - - +
1968B ASP* 2.9 24.3 + - - +
2144B THR* 5.7 5.6 - - + -
3646B CYS* 4.4 13.2 - - + +
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Residues in contact with ARG1965 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1743B ARG* 2.8 40.2 + - + +
1745B ILE 4.3 9.3 + - - -
1746B THR* 6.1 2.2 - - - +
1958B SER 5.2 0.6 + - - -
1961B ALA* 3.0 17.0 + - - +
1962B PHE* 3.1 54.3 - - + +
1964B GLU* 1.3 76.5 - - - +
1966B TYR* 1.3 57.4 + - - +
1968B ASP* 3.4 7.0 + - - +
1969B LYS* 2.9 28.9 + - - +
2035B PHE* 5.4 3.4 - - - -
----------------------------------------------------------
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Residues in contact with TYR1966 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1962B PHE* 2.9 39.4 + + + +
1963B ALA* 3.8 4.9 - - - +
1965B ARG* 1.3 78.8 - - + +
1967B VAL* 1.3 58.4 + - - +
1969B LYS* 3.3 6.7 + - + +
1970B LEU* 2.9 61.4 + - + +
2011B LEU* 5.6 3.5 + - + -
2024B LEU* 4.6 7.4 - - - +
2028B ILE* 3.6 31.8 + - + +
2029B ARG* 4.3 5.9 - - - +
2031B ASP* 5.8 2.0 - - + -
2032B LEU* 3.3 48.0 - - + +
3649B PHE* 3.7 31.2 - + - -
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Residues in contact with VAL1967 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1963B ALA 2.9 17.6 + - - +
1964B GLU* 3.1 17.5 - - - +
1966B TYR* 1.3 75.1 - - - +
1968B ASP* 1.3 61.5 + - + +
1970B LEU* 4.3 9.2 - - + -
1971B GLN* 2.9 31.6 + - + +
2007B ILE* 5.9 7.4 - - + -
2010B LEU* 6.4 1.6 - - + -
3637B LEU* 5.4 9.9 - - + -
3642B THR* 5.4 5.4 - - - +
3645B ALA* 3.8 29.4 - - + +
3646B CYS* 3.8 24.7 - - + +
3649B PHE* 4.9 14.4 - - + -
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Residues in contact with ASP1968 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1964B GLU 2.9 17.8 + - - +
1965B ARG* 3.6 8.3 - - - +
1967B VAL* 1.3 77.6 - - + +
1969B LYS* 1.3 61.7 + - - +
1971B GLN* 3.3 10.0 + - - +
1972B ALA* 3.0 24.3 + - - +
3642B THR* 5.7 6.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS1969 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1965B ARG 2.9 17.1 + - - +
1966B TYR* 3.7 7.4 - - + +
1968B ASP* 1.3 75.7 - - - +
1970B LEU* 1.3 58.5 + - - +
1972B ALA* 3.3 7.4 + - - +
1973B ASN* 2.9 29.6 + - - +
2028B ILE* 4.8 17.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU1970 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1966B TYR* 2.9 49.0 + - + +
1967B VAL* 3.8 10.1 - - + +
1969B LYS* 1.3 73.5 - - - +
1971B GLN* 1.3 60.2 + - - +
1973B ASN* 3.4 4.1 + - + +
1974B GLN* 2.9 31.5 + - - +
2010B LEU* 3.6 31.9 - - + -
2011B LEU* 4.8 7.2 - - + -
2024B LEU* 3.9 25.4 - - + -
2028B ILE* 3.9 33.0 - - + -
3637B LEU* 4.0 4.3 - - + +
3649B PHE* 5.2 2.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN1971 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1967B VAL* 2.9 19.5 + - + +
1968B ASP* 3.7 8.3 - - - +
1970B LEU* 1.3 78.5 - - - +
1972B ALA* 1.3 56.9 + - - +
1974B GLN* 3.4 1.4 + - - +
1975B ARG* 2.9 29.9 + - + +
3637B LEU* 3.6 46.2 + - + +
3638B TYR* 4.4 4.0 - - + +
3639B ASN* 4.2 6.7 - - - +
3640B LEU* 3.8 22.5 + - - +
3642B THR* 4.4 20.5 + - - -
3645B ALA* 5.3 4.8 - - - +
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Residues in contact with ALA1972 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1968B ASP 3.0 17.1 + - - +
1969B LYS* 3.6 7.9 - - - +
1971B GLN* 1.3 78.1 - - - +
1973B ASN* 1.3 56.0 + - - +
1975B ARG* 3.3 6.4 + - - +
1976B ASP* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN1973 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1969B LYS 2.9 17.8 + - - +
1970B LEU* 3.8 6.3 - - + +
1972B ALA* 1.3 76.3 - - - +
1974B GLN* 1.3 57.4 + - - +
1976B ASP* 3.3 8.1 + - - +
1977B ARG* 2.9 29.0 + - - +
2024B LEU* 5.9 2.2 - - + -
2025B PRO* 5.7 7.4 - - + -
2028B ILE* 3.9 23.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN1974 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1970B LEU 2.9 18.5 + - - +
1971B GLN 3.8 1.6 - - - +
1973B ASN* 1.3 73.5 - - - +
1975B ARG* 1.3 62.0 + - - +
1977B ARG* 3.3 10.9 + - - +
1978B TYR* 2.9 35.7 + - + +
1981B LEU* 6.0 0.4 - - - +
1998B GLU* 4.1 28.3 + - - +
2006B GLN* 4.4 13.8 - - - +
2010B LEU* 5.0 11.8 - - - +
2023B PRO* 4.7 10.7 - - - +
3637B LEU* 3.7 33.7 - - + +
3638B TYR* 5.4 5.6 - - + +
----------------------------------------------------------
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Residues in contact with ARG1975 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1971B GLN* 2.9 19.0 + - + +
1972B ALA* 3.3 6.7 + - - +
1974B GLN* 1.3 77.2 - - - +
1976B ASP* 1.3 57.6 + - - +
1978B TYR* 3.4 6.5 + - - +
1979B GLY* 2.9 25.3 + - - -
3638B TYR* 4.5 21.9 - - + +
----------------------------------------------------------
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Residues in contact with ASP1976 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1972B ALA 2.9 17.2 + - - +
1973B ASN* 3.7 7.2 - - - +
1975B ARG* 1.3 75.8 - - - +
1977B ARG* 1.3 57.6 + - - +
1979B GLY* 3.2 2.4 + - - -
1980B ILE* 2.9 30.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG1977 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1973B ASN 2.9 17.0 + - - +
1974B GLN* 3.7 16.2 - - - +
1975B ARG 3.3 0.2 - - - -
1976B ASP* 1.3 76.6 - - - +
1978B TYR* 1.3 57.1 + - - +
1980B ILE* 3.1 12.0 - - - +
1981B LEU* 3.0 40.6 + - + +
----------------------------------------------------------
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Residues in contact with TYR1978 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974B GLN* 2.9 24.6 + - + +
1975B ARG* 3.8 6.5 - - - +
1977B ARG* 1.3 76.1 - - - +
1979B GLY* 1.3 62.9 + - - +
1981B LEU* 3.8 22.7 - - + -
1982B MET* 3.3 32.8 + - + +
1998B GLU* 5.6 2.5 - - + -
1999B PHE* 3.8 30.6 - + + -
3638B TYR* 3.4 46.1 + + + -
----------------------------------------------------------
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Residues in contact with GLY1979 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1975B ARG 2.9 15.3 + - - -
1976B ASP* 3.6 4.3 - - - -
1977B ARG 3.1 0.4 - - - -
1978B TYR* 1.3 80.1 - - - +
1980B ILE* 1.3 61.3 + - - +
1982B MET* 3.7 12.2 + - - +
1983B LYS* 4.1 6.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE1980 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1976B ASP 2.9 17.4 + - - +
1977B ARG* 3.1 22.0 - - + +
1979B GLY* 1.3 78.0 - - - +
1981B LEU* 1.3 62.5 + - + +
1982B MET 3.5 0.3 + - - -
1983B LYS* 3.8 11.0 + - - +
1984B ALA* 4.0 8.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU1981 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974B GLN* 6.0 0.9 - - - +
1977B ARG* 3.0 35.7 + - + +
1978B TYR* 3.8 25.6 - - + +
1980B ILE* 1.3 77.9 - - + +
1982B MET* 1.3 69.8 + - - +
1983B LYS 3.3 0.2 - - - -
1984B ALA* 3.2 26.6 + - + +
1995B ARG* 4.7 15.3 - - + -
1998B GLU* 3.3 26.7 - - - +
----------------------------------------------------------
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Residues in contact with MET1982 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1978B TYR* 3.3 32.3 + - + +
1979B GLY* 3.9 7.9 - - - +
1980B ILE 3.3 0.6 - - - -
1981B LEU* 1.3 83.7 - - + +
1983B LYS* 1.3 61.6 + - - +
1984B ALA 3.8 4.3 - - - +
----------------------------------------------------------
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Residues in contact with LYS1983 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1979B GLY 4.1 5.8 + - - +
1980B ILE 3.8 9.2 + - - +
1981B LEU 3.3 0.4 - - - -
1982B MET* 1.3 76.9 - - - +
1984B ALA* 1.3 63.5 + - - +
1985B PHE* 3.5 3.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA1984 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1980B ILE 4.0 7.0 + - - +
1981B LEU* 3.2 25.1 + - + +
1982B MET 3.3 5.5 - - - +
1983B LYS* 1.3 78.3 - - - +
1985B PHE* 1.3 67.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il