Contacts of the helix formed by residues 1933 - 1984 (chain D) in PDB entry 6X34
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1933 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1835D VAL* 4.9 13.5 - - + -
1836D GLU* 3.9 35.9 - - + +
1931D LYS 4.6 1.8 - - - +
1932D LEU* 1.3 94.8 - - + +
1934D GLU* 1.3 63.7 + - - +
1935D SER* 3.5 4.5 - - - +
1936D VAL* 3.3 23.9 - - + +
1937D LYS* 3.1 16.0 - - - +
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Residues in contact with GLU1934 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1933D PRO* 1.3 73.8 - - - +
1935D SER* 1.3 61.4 + - - +
1937D LYS* 3.1 3.2 + - - -
1938D LEU* 2.9 26.2 + - - +
2112D VAL 5.8 2.7 - - - +
2114D SER* 5.4 9.2 - - - +
2117D LEU* 3.2 27.6 - - + +
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Residues in contact with SER1935 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1836D GLU* 5.7 2.5 - - - +
1840D VAL* 3.6 29.9 - - - +
1933D PRO* 3.5 4.3 - - - +
1934D GLU* 1.3 78.2 - - - +
1936D VAL* 1.3 58.7 + - - +
1938D LEU* 3.2 13.1 + - - +
1939D GLN* 2.9 25.0 + - - +
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Residues in contact with VAL1936 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1836D GLU* 4.8 2.9 - - - -
1839D PHE* 3.6 28.0 - - + +
1840D VAL* 3.6 26.5 - - + +
1843D LEU* 4.1 11.4 - - + -
1932D LEU* 3.5 34.8 - - + -
1933D PRO* 3.3 25.6 - - + +
1935D SER* 1.3 71.5 - - - +
1937D LYS* 1.3 63.4 + - - +
1939D GLN* 3.2 9.8 + - - +
1940D MET* 2.9 35.4 + - + +
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Residues in contact with LYS1937 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1930D MET 5.0 3.8 + - - -
1932D LEU* 3.7 36.3 + - + +
1933D PRO 3.1 19.1 - - - +
1934D GLU* 3.1 11.3 + - - +
1936D VAL* 1.3 79.4 - - - +
1938D LEU* 1.3 56.0 + - - +
1940D MET* 3.3 5.6 + - + +
1941D CYS* 2.9 28.3 + - - +
2106D TRP* 3.5 69.0 - - + +
2117D LEU* 3.6 17.5 - - + -
2121D MET* 6.1 0.8 - - - +
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Residues in contact with LEU1938 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1934D GLU 2.9 13.3 + - - +
1935D SER* 3.2 11.9 + - - +
1937D LYS* 1.3 75.7 - - - +
1939D GLN* 1.3 60.6 + - - +
1941D CYS* 3.3 8.8 + - + +
1942D ASN* 2.9 31.5 + - + +
2116D GLU* 4.9 14.1 - - + +
2117D LEU* 4.0 25.7 - - + +
2120D ALA* 5.5 6.7 - - + -
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Residues in contact with GLN1939 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1840D VAL* 5.6 2.5 - - + +
1843D LEU* 4.2 28.9 - - + +
1844D LYS* 5.3 9.9 - - + +
1847D SER* 4.4 4.5 + - - +
1935D SER 2.9 13.6 + - - +
1936D VAL* 3.4 13.5 - - - +
1937D LYS 3.2 0.2 - - - -
1938D LEU* 1.3 82.3 - - + +
1940D MET* 1.3 58.5 + - - +
1942D ASN* 3.2 7.9 + - - +
1943D LEU* 2.9 30.5 + - - +
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Residues in contact with MET1940 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1843D LEU* 3.7 33.2 - - + -
1867D ILE* 3.6 31.0 - - + -
1927D LEU* 3.9 18.4 - - + -
1928D LEU* 4.5 17.7 - - + -
1932D LEU* 6.1 3.4 - - + -
1936D VAL* 2.9 21.6 + - + +
1937D LYS* 3.8 5.4 - - + +
1939D GLN* 1.3 74.3 - - - +
1941D CYS* 1.3 60.4 + - - +
1943D LEU* 3.3 16.2 + - + +
1944D LEU* 2.9 39.1 + - + +
2106D TRP* 4.0 21.3 - - + -
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Residues in contact with CYS1941 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1937D LYS 2.9 14.9 + - - +
1938D LEU* 3.4 12.6 - - - +
1940D MET* 1.3 77.6 - - - +
1942D ASN* 1.3 57.3 + - - +
1944D LEU* 3.3 1.7 + - - -
1945D GLU* 2.9 28.0 + - - +
2103D VAL* 6.3 0.2 - - - -
2106D TRP* 4.9 5.5 - - + -
2117D LEU* 6.4 0.4 - - + -
2120D ALA* 3.5 47.1 - - + -
2121D MET* 3.8 15.0 - - + -
2124D LEU* 3.2 29.5 - - - +
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Residues in contact with ASN1942 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1728D ARG* 4.0 26.8 + - - +
1847D SER* 4.1 19.6 + - - -
1938D LEU* 2.9 21.4 + - + +
1939D GLN* 3.6 7.0 - - - +
1941D CYS* 1.3 75.9 - - - +
1943D LEU* 1.3 59.5 + - - +
1945D GLU* 3.3 8.2 + - - +
1946D TYR* 2.9 31.8 + - - +
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Residues in contact with LEU1943 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1843D LEU* 4.7 12.3 - - + +
1846D VAL* 4.9 11.2 - - + -
1847D SER* 3.3 31.0 - - - +
1850D LEU* 3.9 28.5 - - + -
1863D ILE* 5.8 3.1 - - + -
1867D ILE* 4.8 9.4 - - + -
1939D GLN 2.9 10.7 + - - +
1940D MET* 3.3 37.2 + - + +
1942D ASN* 1.3 78.1 - - - +
1944D LEU* 1.3 57.8 + - + +
1946D TYR* 3.3 9.6 + - + +
1947D PHE* 2.9 44.4 + - + -
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Residues in contact with LEU1944 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1867D ILE* 5.4 11.4 - - + -
1928D LEU* 5.5 7.4 - - + -
1940D MET* 2.9 24.5 + - + +
1941D CYS* 5.1 0.9 - - - -
1943D LEU* 1.3 76.3 - - + +
1945D GLU* 1.3 57.5 + - - +
1947D PHE* 3.3 22.2 + - + +
1948D CYS* 2.9 28.9 + - - +
2095D LEU* 5.6 5.9 - - + +
2098D LEU* 5.4 5.8 - - + -
2099D VAL* 3.9 39.7 - - + -
2102D THR* 4.9 6.3 - - - +
2103D VAL* 5.6 4.0 - - + -
2106D TRP* 5.5 9.9 - - + -
2124D LEU* 3.6 24.1 - - + +
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Residues in contact with GLU1945 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1941D CYS* 2.9 18.1 + - - +
1942D ASN* 3.6 10.8 - - - +
1943D LEU 3.3 0.2 - - - -
1944D LEU* 1.3 77.3 - - - +
1946D TYR* 1.3 58.1 + - - +
1948D CYS* 3.3 6.2 + - - +
1949D ASP* 2.9 39.2 + - - +
2124D LEU* 4.0 13.8 - - + +
2127D ARG* 5.7 7.6 - - - +
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Residues in contact with TYR1946 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731D LEU* 5.7 8.3 - - + -
1850D LEU* 2.9 56.7 + - + +
1851D VAL* 3.6 38.9 + - + -
1853D GLY* 4.5 4.2 + - - -
1942D ASN* 2.9 21.4 + - - +
1943D LEU* 3.6 8.3 - - + +
1945D GLU* 1.3 76.7 - - - +
1947D PHE* 1.3 66.3 + + - +
1949D ASP* 3.3 11.3 + - + +
1950D GLN* 2.9 67.7 + - + +
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Residues in contact with PHE1947 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1764D PRO* 4.7 31.0 - - + +
1765D GLY* 6.3 0.7 - - - -
1850D LEU* 3.6 33.4 - - + -
1860D VAL* 6.3 3.1 - - + -
1863D ILE* 4.0 21.5 - - + -
1864D LEU* 5.7 5.6 - - + -
1867D ILE* 4.8 14.6 - - + -
1943D LEU* 2.9 31.7 + - + -
1944D LEU* 3.6 23.1 - - + +
1945D GLU 3.3 0.2 - - - -
1946D TYR* 1.3 83.6 - + - +
1948D CYS* 1.3 56.9 + - - +
1950D GLN* 3.3 8.2 + - + +
1951D GLU* 2.9 29.2 + - - +
2095D LEU* 4.7 18.1 - - + +
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Residues in contact with CYS1948 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1944D LEU 2.9 16.9 + - - +
1945D GLU* 3.6 7.6 - - - +
1947D PHE* 1.3 75.7 - - - +
1949D ASP* 1.3 57.4 + - - +
1951D GLU* 3.3 13.4 + - - +
1952D LEU* 2.9 31.2 + - - +
2095D LEU* 5.4 8.2 - - + +
2124D LEU* 5.5 7.0 - - + -
2127D ARG* 3.9 48.0 - - - +
2128D GLN* 5.0 4.9 - - + -
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Residues in contact with ASP1949 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731D LEU* 6.0 1.9 - - - +
1734D TYR* 5.0 6.3 + - - +
1945D GLU* 2.9 24.1 + - - +
1946D TYR* 3.6 13.4 - - + +
1948D CYS* 1.3 78.2 - - - +
1950D GLN* 1.3 59.0 + - - +
1952D LEU* 3.3 5.8 + - - +
1953D GLN* 2.9 29.6 + - - +
2127D ARG* 2.5 40.9 + - - +
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Residues in contact with GLN1950 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731D LEU* 5.9 3.4 - - - +
1764D PRO 5.8 0.9 - - - -
1765D GLY* 5.1 20.1 - - - +
1851D VAL 5.5 0.2 + - - -
1946D TYR* 2.9 65.5 + - + +
1947D PHE* 3.3 9.2 + - + +
1949D ASP* 1.3 76.5 - - - +
1951D GLU* 1.3 57.5 + - - +
1953D GLN* 3.3 25.6 + - - +
1954D HIS* 2.9 29.0 + - - +
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Residues in contact with GLU1951 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1761D HIS* 5.5 2.9 - - - -
1764D PRO* 5.4 10.2 - - + +
1765D GLY 5.9 0.2 - - - +
1947D PHE 2.9 16.2 + - - +
1948D CYS* 3.6 10.0 - - - +
1949D ASP 3.3 0.2 - - - -
1950D GLN* 1.3 75.7 - - - +
1952D LEU* 1.3 57.5 + - - +
1954D HIS* 3.3 9.5 + - + +
1955D ARG* 2.9 54.1 + - - +
2042D HIS* 3.9 16.8 + - + +
2095D LEU* 4.2 28.1 - - - +
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Residues in contact with LEU1952 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1734D TYR* 3.3 33.9 - - + +
1948D CYS* 2.9 21.6 + - - +
1949D ASP* 3.6 6.7 - - - +
1951D GLU* 1.3 76.5 - - - +
1953D GLN* 1.3 56.7 + - - +
1955D ARG* 3.3 21.4 + - - +
1956D VAL* 2.9 38.2 + - + +
2127D ARG* 4.3 16.6 - - - +
2134D GLU* 3.6 37.0 - - + +
2135D LEU* 4.7 3.6 - - + +
2138D ALA* 4.1 17.7 - - + -
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Residues in contact with GLN1953 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1731D LEU* 6.1 0.9 - - - +
1734D TYR* 4.0 30.0 - - + -
1769D THR* 3.8 16.6 + - - +
1770D THR* 4.9 2.9 + - - +
1771D SER* 3.0 37.1 + - - +
1949D ASP 2.9 16.7 + - - +
1950D GLN* 3.6 29.0 + - - +
1952D LEU* 1.3 78.2 - - - +
1954D HIS* 1.3 58.1 + - - +
1956D VAL* 3.3 2.6 + - - +
1957D GLU* 2.9 30.2 + - + +
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Residues in contact with HIS1954 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1745D ILE* 4.6 16.5 - - + +
1746D THR 3.5 24.9 + - - -
1747D LEU* 4.8 8.0 + - - -
1767D GLY* 5.0 16.0 - - - -
1768D VAL 4.7 12.7 + - - +
1950D GLN 2.9 17.5 + - - +
1951D GLU* 3.7 9.9 - - + +
1953D GLN* 1.3 77.5 - - - +
1955D ARG* 1.3 59.3 + - + +
1957D GLU* 3.3 7.1 + - - +
1958D SER* 2.9 29.7 + - - -
2042D HIS* 5.9 6.3 - + - -
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Residues in contact with ARG1955 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1951D GLU* 2.9 39.6 + - - +
1952D LEU* 3.6 32.4 - - - +
1954D HIS* 1.3 80.0 - - + +
1956D VAL* 1.3 61.2 + - + +
1958D SER* 3.3 5.9 + - - -
1959D LEU* 2.9 30.2 + - + +
2039D LEU* 4.8 20.4 - - + +
2042D HIS* 3.2 35.0 + - + +
2043D CYS* 4.6 20.6 - - - +
2131D GLY* 5.6 5.4 + - - -
2135D LEU* 4.6 25.0 - - - +
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Residues in contact with VAL1956 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1734D TYR* 4.2 29.4 - - + +
1736D VAL* 5.3 4.7 - - + -
1952D LEU* 2.9 37.8 + - + +
1953D GLN* 3.7 6.7 - - - +
1955D ARG* 1.3 77.3 - - + +
1957D GLU* 1.3 58.8 + - - +
1959D LEU* 3.3 9.0 + - + +
1960D ALA* 2.9 29.0 + - + +
2135D LEU* 5.8 5.4 - - + -
2138D ALA* 4.1 17.0 - - + +
2139D LEU* 6.6 0.2 - - + -
2142D ALA* 4.3 16.2 - - + -
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Residues in contact with GLU1957 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1736D VAL* 4.9 6.8 - - + +
1742D THR* 5.3 2.2 - - - +
1745D ILE* 6.1 0.7 - - - -
1768D VAL 5.9 1.1 - - - +
1770D THR* 3.2 38.3 - - + +
1953D GLN* 2.9 19.0 + - + +
1954D HIS* 3.7 9.9 - - - +
1955D ARG 3.3 0.2 - - - -
1956D VAL* 1.3 77.9 - - - +
1958D SER* 1.3 57.0 + - - +
1960D ALA* 3.3 6.9 + - - +
1961D ALA* 2.9 29.7 + - - +
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Residues in contact with SER1958 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1745D ILE* 4.2 7.9 + - - +
1746D THR* 3.1 39.2 - - - -
1747D LEU* 3.3 11.8 + - - +
1954D HIS* 2.9 21.2 + - - -
1955D ARG* 3.7 6.5 - - - -
1957D GLU* 1.3 76.0 - - - +
1959D LEU* 1.3 57.8 + - - +
1961D ALA* 3.3 6.5 + - - +
1962D PHE* 2.9 29.6 + - - +
1965D ARG* 5.2 0.9 + - - -
2035D PHE* 4.7 7.4 - - - -
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Residues in contact with LEU1959 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1955D ARG* 2.9 19.6 + - + +
1956D VAL* 3.7 9.6 - - + +
1958D SER* 1.3 75.4 - - - +
1960D ALA* 1.3 58.7 + - + +
1962D PHE* 3.4 8.7 + - + +
1963D ALA* 2.9 29.4 + - + +
2035D PHE* 4.6 9.4 - - + -
2039D LEU* 3.7 30.5 - - + +
2135D LEU* 5.7 9.2 - - + -
2139D LEU* 4.5 14.1 - - + -
3650D LEU* 3.6 28.0 - - + -
3653D TYR* 4.4 24.9 - - + -
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Residues in contact with ALA1960 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1736D VAL* 3.8 33.7 - - + -
1956D VAL* 2.9 19.0 + - + +
1957D GLU 3.6 4.0 - - - +
1959D LEU* 1.3 78.5 - - + +
1961D ALA* 1.3 60.2 + - - +
1963D ALA* 3.3 7.0 + - - +
1964D GLU* 2.9 29.3 + - - +
2144D THR* 4.7 11.0 + - - +
3650D LEU* 5.3 8.7 - - + -
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Residues in contact with ALA1961 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1736D VAL* 5.6 1.3 - - - +
1742D THR* 3.7 27.4 - - - +
1743D ARG* 4.2 13.3 - - + +
1745D ILE 4.8 3.8 - - - +
1957D GLU 2.9 16.0 + - - +
1958D SER* 3.7 6.7 - - - +
1960D ALA* 1.3 76.8 - - - +
1962D PHE* 1.3 62.0 + - - +
1964D GLU* 3.2 6.7 + - - +
1965D ARG* 3.0 33.4 + - - +
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Residues in contact with PHE1962 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1958D SER 2.9 18.0 + - - +
1959D LEU* 3.7 4.7 - - + +
1961D ALA* 1.3 75.6 - - - +
1963D ALA* 1.3 61.1 + - + +
1965D ARG* 3.1 33.0 - - - +
1966D TYR* 2.9 45.5 + + + +
2031D ASP* 4.5 7.6 - - + -
2032D LEU* 3.9 36.3 - - + -
2035D PHE* 3.4 65.5 - + + -
3649D PHE* 5.4 4.9 - + - -
3653D TYR* 5.9 3.1 - + - -
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Residues in contact with ALA1963 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1959D LEU* 2.9 19.2 + - + +
1960D ALA* 3.7 7.6 - - - +
1962D PHE* 1.3 80.0 - - + +
1964D GLU* 1.3 58.6 + - - +
1966D TYR* 3.8 3.8 - - - +
1967D VAL* 2.9 34.0 + - - +
3646D CYS* 4.9 4.9 - - - +
3649D PHE* 3.6 33.7 - - + -
3650D LEU* 4.5 13.7 - - + -
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Residues in contact with GLU1964 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1738D LEU* 5.8 7.4 - - + -
1960D ALA 2.9 17.6 + - - +
1961D ALA* 3.6 7.6 - - - +
1963D ALA* 1.3 77.9 - - - +
1965D ARG* 1.3 63.6 + - - +
1967D VAL* 3.1 12.3 - - - +
1968D ASP* 2.9 23.9 + - - +
2144D THR* 5.7 5.4 - - + -
3646D CYS* 4.4 13.2 - - + +
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Residues in contact with ARG1965 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1743D ARG* 2.8 40.8 + - + +
1745D ILE 4.3 7.9 + - - -
1746D THR* 6.1 2.8 - - - +
1958D SER 5.2 0.6 + - - -
1961D ALA* 3.0 17.6 + - - +
1962D PHE* 3.1 53.5 - - + +
1964D GLU* 1.3 76.1 - - - +
1966D TYR* 1.3 57.9 + - - +
1968D ASP* 3.4 7.1 + - - +
1969D LYS* 2.9 29.5 + - - +
2035D PHE* 5.4 3.0 - - - -
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Residues in contact with TYR1966 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1962D PHE* 2.9 39.0 + + + +
1963D ALA* 3.8 5.2 - - - +
1965D ARG* 1.3 80.5 - - + +
1967D VAL* 1.3 57.8 + - - +
1969D LYS* 3.3 6.4 + - + +
1970D LEU* 2.9 61.9 + - + +
2011D LEU* 5.6 3.2 - - + -
2024D LEU* 4.6 7.6 - - - +
2028D ILE* 3.6 31.9 + - + +
2029D ARG* 4.3 6.1 - - - +
2031D ASP* 5.9 2.5 - - + -
2032D LEU* 3.3 47.6 - - + +
3649D PHE* 3.7 29.6 - + - -
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Residues in contact with VAL1967 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1963D ALA 2.9 17.6 + - - +
1964D GLU* 3.1 18.4 - - - +
1966D TYR* 1.3 75.1 - - - +
1968D ASP* 1.3 61.4 + - + +
1970D LEU* 3.8 8.9 - - + +
1971D GLN* 2.9 30.8 + - + +
2007D ILE* 5.9 7.4 - - + -
2010D LEU* 6.4 1.8 - - + -
3637D LEU* 5.4 9.4 - - + -
3642D THR* 5.4 6.1 - - - +
3645D ALA* 3.8 29.2 - - + +
3646D CYS* 3.8 24.7 - - + +
3649D PHE* 4.9 14.4 - - + -
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Residues in contact with ASP1968 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1964D GLU 2.9 18.3 + - - +
1965D ARG* 3.6 7.9 - - - +
1967D VAL* 1.3 79.1 - - + +
1969D LYS* 1.3 62.2 + - - +
1971D GLN* 3.3 10.3 + - - +
1972D ALA* 3.0 23.9 + - - +
3642D THR* 5.7 5.8 - - - +
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Residues in contact with LYS1969 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1965D ARG 2.9 17.1 + - - +
1966D TYR* 3.7 7.2 - - + +
1968D ASP* 1.3 76.5 - - - +
1970D LEU* 1.3 58.3 - - - +
1972D ALA* 3.3 7.3 + - - +
1973D ASN* 2.9 28.8 + - - +
2028D ILE* 4.8 18.0 - - + +
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Residues in contact with LEU1970 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1966D TYR* 2.9 50.1 + - + +
1967D VAL* 3.8 9.2 - - + +
1969D LYS* 1.3 74.1 - - - +
1971D GLN* 1.3 60.4 + - - +
1973D ASN* 3.4 4.2 + - + +
1974D GLN* 2.9 30.7 + - - +
2010D LEU* 3.6 32.3 - - + -
2011D LEU* 4.8 6.7 - - + -
2024D LEU* 3.9 24.5 - - + -
2028D ILE* 3.9 33.2 - - + -
3637D LEU* 4.0 3.9 - - + +
3649D PHE* 5.2 2.7 - - + -
----------------------------------------------------------
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Residues in contact with GLN1971 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1967D VAL* 2.9 20.5 + - + +
1968D ASP* 3.3 7.8 + - - +
1970D LEU* 1.3 77.6 - - - +
1972D ALA* 1.3 57.0 + - - +
1974D GLN* 3.4 1.0 + - - +
1975D ARG* 2.9 30.1 + - + +
3637D LEU* 3.6 48.4 + - + +
3638D TYR* 4.4 3.8 + - - +
3639D ASN* 4.2 6.9 - - - +
3640D LEU* 3.8 22.7 + - - +
3642D THR* 4.4 20.2 + - - -
3645D ALA* 5.3 5.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA1972 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1968D ASP 3.0 16.9 + - - +
1969D LYS* 3.6 7.2 - - - +
1971D GLN* 1.3 77.9 - - - +
1973D ASN* 1.3 56.8 + - - +
1975D ARG* 3.3 7.2 + - - +
1976D ASP* 2.9 29.0 + - - +
----------------------------------------------------------
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Residues in contact with ASN1973 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1969D LYS 2.9 16.9 + - - +
1970D LEU* 3.8 6.7 - - + +
1971D GLN 3.3 0.2 - - - -
1972D ALA* 1.3 76.0 - - - +
1974D GLN* 1.3 58.6 + - - +
1976D ASP* 3.3 6.7 + - - +
1977D ARG* 2.9 29.2 + - - +
2024D LEU* 5.9 2.0 - - + -
2025D PRO* 5.7 7.2 - - + -
2028D ILE* 3.9 24.5 - - + -
----------------------------------------------------------
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Residues in contact with GLN1974 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1970D LEU 2.9 18.5 + - - +
1971D GLN 3.8 1.6 - - - +
1973D ASN* 1.3 73.6 - - - +
1975D ARG* 1.3 60.4 + - - +
1977D ARG* 3.3 11.8 + - - +
1978D TYR* 2.9 36.0 + - + +
1981D LEU* 6.0 0.6 - - - +
1998D GLU* 4.1 28.5 + - - +
2006D GLN* 4.4 12.4 - - - +
2010D LEU* 5.0 12.5 - - - +
2023D PRO 4.7 10.4 - - - +
3637D LEU* 3.7 34.3 - - + +
3638D TYR* 5.4 5.4 - - + +
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Residues in contact with ARG1975 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1971D GLN* 2.9 19.1 + - + +
1972D ALA* 3.6 7.4 - - - +
1974D GLN* 1.3 76.6 - - - +
1976D ASP* 1.3 57.8 + - - +
1978D TYR* 3.4 6.6 + - - +
1979D GLY* 2.9 25.1 + - - -
3638D TYR* 4.5 21.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP1976 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1972D ALA 2.9 16.9 + - - +
1973D ASN* 3.7 7.4 - - - +
1975D ARG* 1.3 75.2 - - - +
1977D ARG* 1.3 58.4 + - - +
1979D GLY* 3.2 2.2 + - - -
1980D ILE* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG1977 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1973D ASN 2.9 18.1 + - - +
1974D GLN* 3.7 15.7 - - - +
1975D ARG 3.3 0.2 - - - -
1976D ASP* 1.3 77.7 - - - +
1978D TYR* 1.3 57.7 + - - +
1980D ILE* 3.1 11.8 - - + +
1981D LEU* 3.0 40.2 + - + +
----------------------------------------------------------
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Residues in contact with TYR1978 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974D GLN* 2.9 24.2 + - + +
1975D ARG* 3.9 6.3 - - - +
1977D ARG* 1.3 76.5 - - - +
1979D GLY* 1.3 63.1 + - - +
1981D LEU* 3.8 23.1 - - + +
1982D MET* 3.3 32.5 + - + +
1998D GLU* 5.6 2.5 - - - -
1999D PHE* 3.8 30.1 - + + -
3638D TYR* 3.4 46.0 + + + -
----------------------------------------------------------
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Residues in contact with GLY1979 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1975D ARG 2.9 15.5 + - - -
1976D ASP* 3.2 4.7 + - - -
1978D TYR* 1.3 81.0 - - - +
1980D ILE* 1.3 61.6 + - - +
1982D MET* 3.7 11.9 + - - +
1983D LYS* 4.1 6.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE1980 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1976D ASP 2.9 16.9 + - - +
1977D ARG* 3.1 21.3 - - - +
1979D GLY* 1.3 78.2 - - - +
1981D LEU* 1.3 62.3 + - + +
1982D MET 3.5 0.3 + - - -
1983D LYS* 3.8 11.1 + - - +
1984D ALA* 4.0 8.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU1981 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974D GLN* 6.0 0.7 - - - +
1977D ARG* 3.0 34.9 + - + +
1978D TYR* 3.8 25.4 - - + +
1980D ILE* 1.3 78.4 - - + +
1982D MET* 1.3 68.8 + - - +
1983D LYS 3.3 0.2 - - - -
1984D ALA* 3.2 27.0 + - + +
1995D ARG* 4.7 15.9 - - + -
1998D GLU* 3.3 26.5 - - - +
----------------------------------------------------------
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Residues in contact with MET1982 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1978D TYR* 3.3 30.8 + - + +
1979D GLY* 3.9 7.9 - - - +
1980D ILE 3.3 1.0 - - - -
1981D LEU* 1.3 83.3 - - + +
1983D LYS* 1.3 61.7 + - - +
1984D ALA 3.5 5.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS1983 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1979D GLY 4.1 5.2 + - - +
1980D ILE* 3.8 8.6 + - - +
1981D LEU 3.3 0.4 - - - -
1982D MET* 1.3 77.3 - - - +
1984D ALA* 1.3 64.0 + - - +
1985D PHE* 3.5 2.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA1984 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1980D ILE 4.0 6.3 + - - +
1981D LEU* 3.2 24.9 + - - +
1982D MET 3.3 5.1 - - - +
1983D LYS* 1.3 79.7 - - - +
1985D PHE* 1.3 67.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il