Contacts of the helix formed by residues 1933 - 1984 (chain H) in PDB entry 6X34
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1933 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1835H VAL* 4.9 11.7 - - + -
1836H GLU* 3.9 34.8 - - + +
1931H LYS 4.6 1.8 - - - +
1932H LEU* 1.3 94.9 - - + +
1934H GLU* 1.3 63.4 + - - +
1935H SER* 3.5 4.7 - - - +
1936H VAL* 3.3 24.0 - - + +
1937H LYS* 3.1 16.2 - - - +
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Residues in contact with GLU1934 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1933H PRO* 1.3 74.4 - - - +
1935H SER* 1.3 61.5 + - - +
1937H LYS* 3.1 3.6 + - - -
1938H LEU* 2.9 25.5 + - - +
2112H VAL 5.8 2.2 - - - +
2114H SER* 5.4 9.9 - - - +
2117H LEU* 3.2 26.9 - - + +
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Residues in contact with SER1935 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1836H GLU* 5.7 2.6 - - - +
1840H VAL* 3.6 29.6 - - - +
1933H PRO* 3.5 3.1 - - - +
1934H GLU* 1.3 78.8 - - - +
1936H VAL* 1.3 58.3 + - - +
1938H LEU* 3.2 12.3 + - - +
1939H GLN* 2.9 25.3 + - - +
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Residues in contact with VAL1936 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1836H GLU* 4.8 2.9 - - - -
1839H PHE* 3.6 28.5 - - + +
1840H VAL* 3.6 26.2 - - + +
1843H LEU* 4.1 10.8 - - + -
1932H LEU* 3.5 34.1 - - + -
1933H PRO* 3.3 26.2 - - + +
1935H SER* 1.3 73.8 - - - +
1937H LYS* 1.3 62.9 + - - +
1939H GLN* 3.4 8.2 - - - +
1940H MET* 2.9 36.3 + - + +
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Residues in contact with LYS1937 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1930H MET 5.0 3.5 + - - -
1932H LEU* 3.7 36.0 + - + +
1933H PRO 3.1 19.5 + - - +
1934H GLU* 3.1 10.8 + - - +
1936H VAL* 1.3 79.6 - - - +
1938H LEU* 1.3 56.3 + - - +
1940H MET* 3.3 5.1 + - + +
1941H CYS* 2.9 27.6 + - - +
2106H TRP* 3.5 70.0 - - + +
2117H LEU* 3.6 17.3 - - + -
2121H MET* 6.1 0.4 - - - +
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Residues in contact with LEU1938 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1934H GLU 2.9 11.5 + - - +
1935H SER* 3.2 13.2 + - - +
1937H LYS* 1.3 77.2 - - - +
1939H GLN* 1.3 62.5 + - + +
1941H CYS* 3.3 8.0 + - + +
1942H ASN* 2.9 31.1 + - + +
2116H GLU* 4.9 13.9 - - + +
2117H LEU* 4.0 26.1 - - + +
2120H ALA* 5.5 7.2 - - + -
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Residues in contact with GLN1939 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1840H VAL* 5.6 2.5 - - + +
1843H LEU* 4.2 28.5 - - + -
1844H LYS* 5.3 9.4 - - + +
1847H SER* 4.4 5.2 + - - +
1935H SER 2.9 13.4 + - - +
1936H VAL* 3.4 13.5 - - - +
1937H LYS 3.2 0.2 - - - -
1938H LEU* 1.3 81.8 - - + +
1940H MET* 1.3 59.8 + - - +
1942H ASN* 3.2 7.7 + - - +
1943H LEU* 2.9 30.5 + - + +
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Residues in contact with MET1940 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1843H LEU* 3.7 32.8 - - + -
1867H ILE* 3.6 31.0 - - + -
1927H LEU* 3.9 18.4 - - + -
1928H LEU* 4.5 16.8 - - + -
1932H LEU* 6.1 3.4 - - + -
1936H VAL* 2.9 22.3 + - + +
1937H LYS* 3.8 5.8 - - + +
1939H GLN* 1.3 73.1 - - - +
1941H CYS* 1.3 61.5 + - - +
1943H LEU* 3.3 16.8 + - + +
1944H LEU* 2.9 39.2 + - + +
2106H TRP* 4.0 20.6 - - + -
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Residues in contact with CYS1941 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1937H LYS 2.9 15.1 + - - +
1938H LEU* 3.4 13.0 - - - +
1940H MET* 1.3 76.8 - - - +
1942H ASN* 1.3 56.5 + - - +
1944H LEU* 3.3 1.7 + - - -
1945H GLU* 2.9 27.8 + - - +
2103H VAL* 6.3 0.4 - - - -
2106H TRP* 4.9 5.1 - - + -
2117H LEU* 6.4 0.4 - - + -
2120H ALA* 3.5 47.1 - - + -
2121H MET* 3.8 15.7 - - + -
2124H LEU* 3.2 29.5 - - - +
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Residues in contact with ASN1942 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1728H ARG* 4.0 26.1 + - - +
1847H SER* 4.1 20.2 + - - +
1938H LEU* 2.9 21.0 + - + +
1939H GLN* 3.2 6.3 + - - +
1941H CYS* 1.3 75.0 - - - +
1943H LEU* 1.3 60.1 + - - +
1945H GLU* 3.3 8.2 + - - +
1946H TYR* 2.9 31.1 + - - +
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Residues in contact with LEU1943 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1843H LEU* 4.7 12.8 - - + +
1846H VAL* 4.9 11.0 - - + -
1847H SER* 3.3 31.4 - - - +
1850H LEU* 3.9 28.5 - - + -
1863H ILE* 5.8 3.6 - - + -
1867H ILE* 4.8 9.4 - - + -
1939H GLN* 2.9 11.5 + - + +
1940H MET* 3.3 36.1 + - + +
1942H ASN* 1.3 77.1 - - - +
1944H LEU* 1.3 58.5 + - + +
1946H TYR* 3.3 9.5 + - + +
1947H PHE* 2.9 45.6 + - + -
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Residues in contact with LEU1944 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1867H ILE* 5.4 11.2 - - + -
1928H LEU* 5.5 7.2 - - + -
1940H MET* 2.9 25.2 + - + +
1941H CYS* 5.1 0.7 - - - -
1943H LEU* 1.3 77.0 - - + +
1945H GLU* 1.3 57.6 + - - +
1947H PHE* 3.3 21.5 + - + +
1948H CYS* 2.9 28.9 + - - +
2095H LEU* 5.6 5.8 - - + +
2098H LEU* 5.4 6.1 - - + -
2099H VAL* 3.9 40.8 - - + -
2102H THR* 4.9 7.0 - - - +
2103H VAL* 5.6 3.6 - - + -
2106H TRP* 5.5 10.3 - - + -
2124H LEU* 3.6 24.4 - - + +
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Residues in contact with GLU1945 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1941H CYS* 2.9 19.0 + - - +
1942H ASN* 3.6 9.6 - - - +
1944H LEU* 1.3 77.4 - - - +
1946H TYR* 1.3 56.2 + - - +
1948H CYS* 3.3 6.4 + - - +
1949H ASP* 2.9 39.2 + - - +
2124H LEU* 4.0 13.6 - - + +
2127H ARG* 5.7 8.5 - - - +
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Residues in contact with TYR1946 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731H LEU* 5.7 8.5 - - + -
1850H LEU* 2.9 56.7 + - + +
1851H VAL* 3.6 39.3 + - + -
1853H GLY* 4.5 4.2 + - - -
1942H ASN* 2.9 21.6 + - - +
1943H LEU* 3.6 8.1 - - + +
1945H GLU* 1.3 76.4 - - - +
1947H PHE* 1.3 66.4 + + - +
1949H ASP* 3.3 11.9 + - + +
1950H GLN* 2.9 68.4 + - + +
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Residues in contact with PHE1947 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1764H PRO* 4.7 31.4 - - + +
1765H GLY* 6.3 0.7 - - - -
1850H LEU* 3.6 33.2 - - + -
1860H VAL* 6.3 3.1 - - + -
1863H ILE* 4.0 20.6 - - + -
1864H LEU* 5.7 5.8 - - + -
1867H ILE* 4.8 15.0 - - + -
1943H LEU* 2.9 31.5 + - + -
1944H LEU* 3.6 24.7 - - + +
1945H GLU 3.3 0.2 - - - -
1946H TYR* 1.3 87.8 - + - +
1948H CYS* 1.3 56.8 + - - +
1950H GLN* 3.3 7.5 + - + +
1951H GLU* 2.9 30.0 + - - +
2095H LEU* 4.7 17.9 - - + -
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Residues in contact with CYS1948 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1944H LEU 2.9 16.6 + - - +
1945H GLU* 3.6 7.6 - - - +
1947H PHE* 1.3 75.1 - - - +
1949H ASP* 1.3 57.6 + - - +
1951H GLU* 3.3 12.7 + - - +
1952H LEU* 2.9 30.9 + - - +
2095H LEU* 5.4 7.7 - - + +
2124H LEU* 5.5 7.2 - - + -
2127H ARG* 3.9 48.0 - - + -
2128H GLN* 5.0 5.6 - - + -
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Residues in contact with ASP1949 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731H LEU* 6.0 1.9 - - - +
1734H TYR* 5.0 7.0 + - - +
1945H GLU* 2.9 21.8 + - - +
1946H TYR* 3.3 12.3 + - + +
1948H CYS* 1.3 77.1 - - - +
1950H GLN* 1.3 57.6 + - + +
1952H LEU* 3.3 5.8 + - - +
1953H GLN* 2.9 29.4 + - - +
2127H ARG* 2.5 40.8 + - - +
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Residues in contact with GLN1950 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731H LEU* 5.9 3.8 - - - +
1764H PRO* 5.8 1.1 - - + -
1765H GLY* 5.1 21.0 - - - +
1946H TYR* 2.9 65.6 + - + +
1947H PHE* 3.6 8.7 - - + +
1949H ASP* 1.3 77.1 - - + +
1951H GLU* 1.3 56.9 + - - +
1953H GLN* 3.3 24.7 + - - +
1954H HIS* 2.9 29.6 + - - +
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Residues in contact with GLU1951 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1761H HIS* 5.5 3.3 - - - -
1764H PRO* 5.5 10.9 - - + +
1765H GLY 5.9 0.2 - - - +
1947H PHE 2.9 16.0 + - - +
1948H CYS* 3.6 10.7 - - - +
1949H ASP 3.3 0.2 - - - -
1950H GLN* 1.3 75.2 - - - +
1952H LEU* 1.3 57.5 + - - +
1954H HIS* 3.3 10.0 + - + +
1955H ARG* 2.9 54.3 + - - +
2042H HIS* 3.9 16.9 + - + +
2095H LEU* 4.2 27.8 - - - +
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Residues in contact with LEU1952 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1734H TYR* 3.3 33.9 - - + +
1948H CYS* 2.9 20.3 + - - +
1949H ASP* 3.6 6.7 - - - +
1950H GLN 3.3 0.2 - - - -
1951H GLU* 1.3 76.0 - - - +
1953H GLN* 1.3 58.5 + - - +
1955H ARG* 3.3 21.5 + - + +
1956H VAL* 2.9 38.4 + - + +
2127H ARG* 4.3 17.7 - - - +
2134H GLU* 3.6 37.0 - - + +
2135H LEU* 4.7 3.1 - - + +
2138H ALA* 4.1 17.0 - - + -
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Residues in contact with GLN1953 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731H LEU* 6.1 0.9 - - - +
1734H TYR* 4.0 28.7 - - + -
1769H THR* 3.8 16.2 + - - +
1770H THR* 4.9 2.7 - - - +
1771H SER* 3.0 37.9 + - - +
1949H ASP 2.9 16.9 + - - +
1950H GLN* 3.3 29.3 + - - +
1952H LEU* 1.3 77.2 - - - +
1954H HIS* 1.3 57.5 + - - +
1956H VAL* 3.3 2.6 + - - +
1957H GLU* 2.9 29.8 + - + +
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Residues in contact with HIS1954 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1745H ILE* 4.6 16.3 - - + +
1746H THR 3.5 24.5 + - - -
1747H LEU* 4.8 8.6 + - - -
1767H GLY* 5.0 16.3 - - - -
1768H VAL 4.7 13.3 + - - +
1950H GLN 2.9 16.5 + - - +
1951H GLU* 3.7 10.8 - - + +
1952H LEU 3.3 0.2 - - - -
1953H GLN* 1.3 78.1 - - - +
1955H ARG* 1.3 59.1 + - - +
1957H GLU* 3.3 7.8 + - - +
1958H SER* 2.9 29.8 + - - -
2042H HIS* 5.9 6.5 - + - -
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Residues in contact with ARG1955 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1951H GLU* 2.9 39.4 + - - +
1952H LEU* 3.6 31.2 - - - +
1953H GLN 3.3 0.2 - - - -
1954H HIS* 1.3 79.5 - - + +
1956H VAL* 1.3 60.3 + - - +
1958H SER* 3.3 6.8 + - - +
1959H LEU* 2.9 29.9 + - + +
2039H LEU* 4.8 21.5 - - + +
2042H HIS* 3.2 33.5 + - + +
2043H CYS* 4.6 21.0 - - - +
2131H GLY* 5.6 4.8 + - - -
2135H LEU* 4.6 25.8 - - - +
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Residues in contact with VAL1956 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1734H TYR* 4.2 28.9 - - + +
1736H VAL* 5.3 5.2 - - + -
1952H LEU* 2.9 38.0 + - + +
1953H GLN* 3.7 6.3 - - - +
1955H ARG* 1.3 79.0 - - + +
1957H GLU* 1.3 59.5 + - - +
1959H LEU* 3.3 9.2 + - + +
1960H ALA* 2.9 29.5 + - + +
2135H LEU* 5.8 5.2 - - + -
2138H ALA* 4.1 17.5 - - + +
2139H LEU* 6.6 0.2 - - + -
2142H ALA* 4.3 16.2 - - + -
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Residues in contact with GLU1957 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1736H VAL* 4.9 6.9 - - + +
1742H THR* 5.3 2.2 - - - +
1745H ILE* 6.1 1.3 - - - -
1768H VAL 5.9 1.1 - - - +
1770H THR* 3.2 38.1 - - + +
1953H GLN* 2.9 18.1 + - + +
1954H HIS* 3.7 9.2 - - - +
1956H VAL* 1.3 79.1 - - - +
1958H SER* 1.3 56.2 + - - +
1960H ALA* 3.3 7.0 + - - +
1961H ALA* 2.9 29.1 + - - +
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Residues in contact with SER1958 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1745H ILE* 4.2 8.9 + - - +
1746H THR* 3.1 40.5 - - - -
1747H LEU* 3.3 10.8 + - - +
1954H HIS* 2.9 21.0 + - - -
1955H ARG* 3.7 7.2 - - - -
1957H GLU* 1.3 74.8 - - - +
1959H LEU* 1.3 57.4 + - - +
1961H ALA* 3.3 6.4 + - - +
1962H PHE* 2.9 29.9 + - - +
1965H ARG* 5.2 0.5 + - - -
2035H PHE* 4.4 7.3 - - - -
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Residues in contact with LEU1959 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1955H ARG* 2.9 19.2 + - + +
1956H VAL* 3.7 9.0 - - + +
1958H SER* 1.3 76.3 - - - +
1960H ALA* 1.3 58.6 + - + +
1962H PHE* 3.4 9.0 + - + +
1963H ALA* 2.9 30.0 + - + +
2035H PHE* 4.6 9.4 - - + -
2039H LEU* 3.7 30.1 - - + -
2135H LEU* 5.7 9.2 - - + -
2139H LEU* 4.5 14.6 - - + -
3650H LEU* 3.6 28.9 - - + -
3653H TYR* 4.4 24.9 - - + -
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Residues in contact with ALA1960 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1736H VAL* 3.8 33.9 - - + -
1956H VAL* 2.9 19.2 + - + +
1957H GLU 3.3 4.7 + - - +
1959H LEU* 1.3 78.9 - - + +
1961H ALA* 1.3 59.7 + - - +
1963H ALA* 3.3 6.8 + - - +
1964H GLU* 2.9 28.9 + - - +
2144H THR* 4.7 10.9 + - - +
3650H LEU* 5.3 9.0 - - + -
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Residues in contact with ALA1961 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1736H VAL* 5.6 1.9 - - - +
1742H THR* 3.7 26.9 - - - +
1743H ARG* 4.2 14.4 - - - +
1745H ILE 4.8 3.8 - - - +
1957H GLU 2.9 17.1 + - - +
1958H SER* 3.7 6.7 - - - +
1960H ALA* 1.3 76.6 - - - +
1962H PHE* 1.3 61.4 + - - +
1964H GLU* 3.2 7.5 + - - +
1965H ARG* 3.0 33.4 + - - +
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Residues in contact with PHE1962 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1958H SER 2.9 17.4 + - - +
1959H LEU* 3.7 6.1 - - + +
1961H ALA* 1.3 76.3 - - - +
1963H ALA* 1.3 60.4 + - + +
1965H ARG* 3.1 32.7 - - - +
1966H TYR* 2.9 45.2 + + + +
2031H ASP* 4.5 7.9 - - + -
2032H LEU* 3.9 36.6 - - + -
2035H PHE* 3.4 65.5 - + + -
3649H PHE* 5.4 5.4 - + - -
3653H TYR* 5.9 3.1 - + - -
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Residues in contact with ALA1963 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1959H LEU* 2.9 19.8 + - + +
1960H ALA* 3.7 7.6 - - - +
1961H ALA 3.3 0.2 - - - -
1962H PHE* 1.3 79.9 - - + +
1964H GLU* 1.3 57.7 + - - +
1966H TYR* 3.8 3.8 - - - +
1967H VAL* 2.9 33.2 + - - +
3646H CYS* 4.9 6.5 - - + +
3649H PHE* 3.6 33.3 - - + -
3650H LEU* 4.5 13.9 - - + -
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Residues in contact with GLU1964 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1738H LEU* 5.8 7.0 - - + -
1960H ALA 2.9 17.2 + - - +
1961H ALA* 3.2 8.5 + - - +
1963H ALA* 1.3 77.2 - - - +
1965H ARG* 1.3 63.2 + - - +
1967H VAL* 3.1 12.2 - - - +
1968H ASP* 2.9 24.7 + - - +
2144H THR* 5.7 5.6 - - + -
3646H CYS* 4.4 14.5 - - + +
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Residues in contact with ARG1965 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1743H ARG* 2.8 40.3 + - + +
1745H ILE 4.3 8.3 + - - -
1746H THR* 6.1 3.0 - - - +
1958H SER 5.2 0.8 + - - -
1961H ALA* 3.0 16.4 + - - +
1962H PHE* 3.1 54.4 - - + +
1964H GLU* 1.3 76.2 - - - +
1966H TYR* 1.3 58.6 + - - +
1968H ASP* 3.4 7.2 + - - +
1969H LYS* 2.9 28.9 + - - +
2035H PHE* 5.4 2.6 - - - -
----------------------------------------------------------
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Residues in contact with TYR1966 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1962H PHE* 2.9 38.2 + + + +
1963H ALA* 3.8 5.4 - - - +
1965H ARG* 1.3 80.5 - - + +
1967H VAL* 1.3 57.5 + - - +
1969H LYS* 3.3 5.6 + - + +
1970H LEU* 2.9 62.6 + - + +
2011H LEU* 5.6 2.9 + - + -
2024H LEU* 4.6 7.8 - - - +
2028H ILE* 3.6 32.1 + - + +
2029H ARG* 4.3 5.5 - - - +
2031H ASP* 5.8 2.5 - - + -
2032H LEU* 3.3 47.9 - - + +
3649H PHE* 3.7 30.5 - + - -
----------------------------------------------------------
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Residues in contact with VAL1967 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1963H ALA 2.9 18.1 + - - +
1964H GLU* 3.1 18.2 - - - +
1966H TYR* 1.3 75.3 - - - +
1968H ASP* 1.3 61.2 + - - +
1970H LEU* 3.8 9.5 - - + -
1971H GLN* 2.9 30.3 + - + +
2007H ILE* 5.9 7.4 - - + -
2010H LEU* 6.4 1.3 - - + -
3637H LEU* 5.4 9.0 - - + -
3642H THR* 5.4 5.6 - - - +
3645H ALA* 3.8 28.3 - - + +
3646H CYS* 3.8 24.9 - - + +
3649H PHE* 4.9 14.1 - - + -
----------------------------------------------------------
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Residues in contact with ASP1968 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1964H GLU 2.9 18.5 + - - +
1965H ARG* 3.6 8.3 - - - +
1966H TYR 3.2 0.2 - - - -
1967H VAL* 1.3 79.7 - - + +
1969H LYS* 1.3 63.5 + - - +
1971H GLN* 3.3 9.7 + - - +
1972H ALA* 3.0 23.2 + - - +
3642H THR* 5.7 6.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS1969 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1965H ARG 2.9 17.2 + - - +
1966H TYR* 3.7 7.9 - - + +
1968H ASP* 1.3 75.6 - - - +
1970H LEU* 1.3 59.1 - - - +
1972H ALA* 3.3 7.1 + - - +
1973H ASN* 2.9 28.8 + - - +
2028H ILE* 4.8 18.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU1970 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1966H TYR* 2.9 48.6 + - + +
1967H VAL* 3.8 8.7 - - + +
1968H ASP 3.2 0.2 - - - -
1969H LYS* 1.3 73.6 - - - +
1971H GLN* 1.3 60.9 + - - +
1973H ASN* 3.8 4.0 - - + +
1974H GLN* 2.9 31.0 + - - +
2010H LEU* 3.6 31.2 - - + -
2011H LEU* 4.8 7.4 - - + -
2024H LEU* 3.9 25.4 - - + -
2028H ILE* 3.9 34.1 - - + -
3637H LEU* 4.0 4.9 - - + +
3649H PHE* 5.2 2.9 - - + -
----------------------------------------------------------
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Residues in contact with GLN1971 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1967H VAL* 2.9 20.2 + - + +
1968H ASP* 3.7 9.0 - - - +
1970H LEU* 1.3 77.1 - - - +
1972H ALA* 1.3 57.7 + - - +
1974H GLN* 3.4 1.2 + - - +
1975H ARG* 2.9 29.9 + - + +
3637H LEU* 3.6 46.9 + - + +
3638H TYR* 4.4 3.6 - - - +
3639H ASN* 4.2 6.5 - - - +
3640H LEU* 3.8 22.1 + - - +
3642H THR* 4.4 19.7 + - - -
3645H ALA* 5.3 5.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA1972 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1968H ASP 3.0 16.3 + - - +
1969H LYS* 3.6 7.9 - - - +
1970H LEU 3.3 0.2 - - - -
1971H GLN* 1.3 77.9 - - - +
1973H ASN* 1.3 56.5 + - - +
1975H ARG* 3.3 6.4 + - - +
1976H ASP* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN1973 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1969H LYS 2.9 16.9 + - - +
1970H LEU* 3.8 7.4 - - + +
1972H ALA* 1.3 76.0 - - - +
1974H GLN* 1.3 56.8 + - - +
1976H ASP* 3.3 7.1 + - - +
1977H ARG* 2.9 29.1 + - - +
2024H LEU* 5.9 2.0 - - + -
2025H PRO* 5.7 7.4 - - + -
2028H ILE* 3.9 24.0 - - + -
----------------------------------------------------------
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Residues in contact with GLN1974 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1970H LEU 2.9 17.6 + - - +
1971H GLN 3.8 1.8 - - - +
1972H ALA 3.3 0.2 - - - -
1973H ASN* 1.3 74.4 - - - +
1975H ARG* 1.3 60.1 + - - +
1977H ARG* 3.7 11.0 - - - +
1978H TYR* 2.9 36.1 + - + +
1981H LEU* 6.0 0.6 - - - +
1998H GLU* 4.1 27.5 + - - +
2006H GLN* 4.4 13.9 - - - +
2010H LEU* 5.0 11.8 - - - +
2023H PRO* 4.7 11.6 - - - +
3637H LEU* 3.7 34.1 - - + +
3638H TYR* 5.4 6.1 - - + +
----------------------------------------------------------
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Residues in contact with ARG1975 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1971H GLN* 2.9 19.1 + - + +
1972H ALA* 3.3 8.0 + - - +
1974H GLN* 1.3 77.0 - - - +
1976H ASP* 1.3 56.3 + - - +
1978H TYR* 3.4 6.5 + - - +
1979H GLY* 2.9 25.5 + - - -
3638H TYR* 4.5 21.4 - - + +
----------------------------------------------------------
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Residues in contact with ASP1976 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1972H ALA 2.9 16.9 + - - +
1973H ASN* 3.7 7.6 - - - +
1975H ARG* 1.3 76.3 - - - +
1977H ARG* 1.3 58.1 + - - +
1979H GLY* 3.2 2.5 + - - +
1980H ILE* 2.9 30.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG1977 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1973H ASN 2.9 18.0 + - - +
1974H GLN* 3.7 15.7 - - - +
1976H ASP* 1.3 77.7 - - - +
1978H TYR* 1.3 57.1 + - - +
1980H ILE* 3.1 12.1 - - + +
1981H LEU* 3.0 41.1 + - + +
----------------------------------------------------------
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Residues in contact with TYR1978 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974H GLN* 2.9 24.5 + - + +
1975H ARG* 3.8 6.1 - - - +
1977H ARG* 1.3 76.1 - - - +
1979H GLY* 1.3 63.4 + - - +
1981H LEU* 3.8 23.6 - - + +
1982H MET* 3.3 32.6 + - + +
1998H GLU* 5.6 2.5 - - + -
1999H PHE* 3.8 31.1 - + + -
3638H TYR* 3.4 46.8 + + + -
----------------------------------------------------------
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Residues in contact with GLY1979 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1975H ARG 2.9 15.4 + - - -
1976H ASP* 3.2 4.0 + - - -
1977H ARG 3.1 0.2 - - - -
1978H TYR* 1.3 79.8 - - - +
1980H ILE* 1.3 61.3 + - - +
1982H MET* 3.7 11.6 + - - +
1983H LYS* 4.1 6.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE1980 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1976H ASP 2.9 17.2 + - - +
1977H ARG* 3.1 21.5 - - + +
1979H GLY* 1.3 77.1 - - - +
1981H LEU* 1.3 63.7 + - + +
1982H MET 3.5 0.2 + - - -
1983H LYS* 3.8 11.5 + - - +
1984H ALA* 4.0 8.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU1981 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1974H GLN* 6.0 0.9 - - - +
1977H ARG* 3.0 36.3 + - + +
1978H TYR* 3.8 25.1 - - + +
1980H ILE* 1.3 79.3 - - + +
1982H MET* 1.3 69.5 + - - +
1983H LYS 3.3 0.2 - - - -
1984H ALA* 3.2 26.7 + - + +
1995H ARG* 4.7 15.5 - - + -
1998H GLU* 3.3 26.5 - - - +
----------------------------------------------------------
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Residues in contact with MET1982 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1978H TYR* 3.3 31.4 + - + +
1979H GLY* 3.9 7.6 - - - +
1980H ILE 3.3 0.8 - - - -
1981H LEU* 1.3 83.7 - - + +
1983H LYS* 1.3 60.3 + - - +
1984H ALA 3.5 4.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS1983 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1979H GLY 4.1 5.8 + - - +
1980H ILE* 3.8 8.8 + - - +
1981H LEU 3.3 0.4 - - - -
1982H MET* 1.3 76.7 - - - +
1984H ALA* 1.3 64.1 + - - +
1985H PHE* 3.5 3.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA1984 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1980H ILE 4.0 6.1 + - - +
1981H LEU* 3.2 25.1 + - + +
1982H MET 3.3 5.5 - - - +
1983H LYS* 1.3 78.9 - - - +
1985H PHE* 1.3 67.0 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il