Contacts of the helix formed by residues 147 - 183 (chain K) in PDB entry 6X5A
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 147 (chain K).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146K GLU* 1.3 86.9 - - - +
148K ASP* 1.3 66.3 + - - +
149K LYS 3.4 0.2 - - - -
150K LEU* 3.4 3.4 + - + +
151K LYS* 2.9 30.5 + - - +
442K PRO 5.0 5.4 - - - +
443K ARG 6.0 2.5 - - - +
445K LEU* 3.6 39.2 - - + +
446K SER* 4.6 11.6 - - - +
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Residues in contact with ASP 148 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146K GLU* 3.2 3.0 + - + -
147K PRO* 1.3 81.3 - - - +
149K LYS* 1.3 68.8 + - + +
151K LYS* 3.3 5.6 + - - +
152K LYS* 3.0 32.7 + - + +
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Residues in contact with LYS 149 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146K GLU* 3.4 36.9 + - + +
147K PRO 3.4 0.4 - - - -
148K ASP* 1.3 79.2 - - + +
150K LEU* 1.3 62.0 + - + +
152K LYS* 3.2 6.4 + - - +
153K VAL* 2.8 38.6 + - + +
500K GLY 3.4 23.8 + - - -
501K PHE* 5.1 7.9 - - - -
504K PHE* 5.5 6.5 - - + +
505K ASP* 3.8 24.5 + - - +
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Residues in contact with LEU 150 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146K GLU* 3.9 16.8 + - + +
147K PRO* 3.4 6.7 + - + +
148K ASP 3.3 0.4 - - - -
149K LYS* 1.3 79.5 - - + +
151K LYS* 1.3 63.3 + - - +
153K VAL* 3.0 21.2 - - - +
154K LEU* 3.0 9.9 + - - +
400K LEU* 3.4 27.0 - - + +
445K LEU* 3.5 29.2 - - + -
446K SER* 5.7 3.1 - - - +
449K PHE* 5.0 12.1 - - + -
501K PHE* 4.9 22.2 - - + -
504K PHE* 3.4 42.0 - - + -
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Residues in contact with LYS 151 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147K PRO 2.9 18.0 + - - +
148K ASP* 3.7 7.6 - - - +
150K LEU* 1.3 75.0 - - - +
152K LYS* 1.3 64.4 + - + +
154K LEU* 3.3 21.7 + - + +
155K ASP* 2.8 47.5 + - - +
158K ARG* 5.8 0.7 - - - +
396K GLU* 6.0 4.7 - - + -
445K LEU* 5.5 7.5 - - + +
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Residues in contact with LYS 152 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148K ASP* 3.0 25.5 + - + +
149K LYS* 3.8 6.5 - - - +
150K LEU 3.2 0.2 - - - -
151K LYS* 1.3 82.6 - - + +
153K VAL* 1.3 57.6 + - - +
155K ASP* 3.0 33.5 + - - +
156K LYS* 2.6 51.6 + - - +
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Residues in contact with VAL 153 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149K LYS* 2.8 22.5 + - + +
150K LEU* 3.0 20.4 - - - +
152K LYS* 1.3 72.6 - - + +
154K LEU* 1.3 65.3 + - + +
156K LYS* 3.0 24.2 + - + +
157K LEU* 3.0 26.5 + - + +
400K LEU* 5.2 1.8 - - + -
403K TYR* 6.2 2.9 - - + -
504K PHE* 3.4 60.3 - - + +
507K LEU* 6.5 0.4 - - + -
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Residues in contact with LEU 154 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150K LEU 3.0 14.4 + - - +
151K LYS* 3.5 21.5 - - + +
153K VAL* 1.3 78.9 - - + +
155K ASP* 1.3 62.6 + - - +
157K LEU* 3.1 14.2 + - + +
158K ARG* 2.9 57.8 + - - +
202K GLU* 6.0 1.3 - - - +
395K LYS* 6.4 0.9 - - + -
396K GLU* 4.2 31.0 - - + +
399K LYS* 5.2 15.9 - - + -
400K LEU* 6.5 0.7 - - + -
403K TYR* 5.7 4.3 - - + -
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Residues in contact with ASP 155 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151K LYS* 2.8 30.5 + - - +
152K LYS* 3.0 43.7 + - - +
154K LEU* 1.3 79.8 - - - +
156K LYS* 1.3 56.8 + - + +
158K ARG* 2.7 45.2 + - + +
159K LEU* 2.9 26.0 - - + +
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Residues in contact with LYS 156 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152K LYS* 2.6 52.0 + - - +
153K VAL* 3.0 19.8 + - + +
155K ASP* 1.3 76.2 - - + +
157K LEU* 1.3 62.5 + - + +
159K LEU* 2.9 13.8 + - + +
160K LYS* 2.9 25.3 + - - +
507K LEU* 3.9 30.1 - - + +
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Residues in contact with LEU 157 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153K VAL* 3.0 37.4 + - + +
154K LEU* 3.1 9.4 + - + +
156K LYS* 1.3 80.3 - - + +
158K ARG* 1.3 56.0 + - - +
160K LYS* 3.3 26.7 - - + +
161K ARG* 2.8 27.2 + - - +
201K TYR* 3.4 21.4 - - + -
403K TYR* 3.4 52.3 - - + +
407K GLN* 6.0 2.9 - - - +
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Residues in contact with ARG 158 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151K LYS* 5.8 1.2 - - - +
154K LEU* 2.9 28.9 + - - +
155K ASP* 2.7 47.3 + - - +
157K LEU* 1.3 72.8 - - - +
159K LEU* 1.3 61.6 + - + -
161K ARG* 3.1 12.0 - - + +
162K LYS* 3.0 42.4 + - + +
395K LYS* 6.1 1.4 - - - +
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Residues in contact with LEU 159 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155K ASP* 2.9 37.4 + - + +
156K LYS* 2.9 14.5 + - + +
158K ARG* 1.3 81.5 - - + +
160K LYS* 1.3 70.7 + - - +
162K LYS* 3.0 27.3 + - + +
163K ASP* 3.0 11.1 + - - +
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Residues in contact with LYS 160 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156K LYS 2.9 11.7 + - - +
157K LEU* 3.3 29.1 - - + +
159K LEU* 1.3 75.4 - - - +
161K ARG* 1.3 49.2 + - - +
163K ASP* 2.5 31.1 + - + +
164K ILE* 2.8 26.4 + - + +
201K TYR* 3.0 28.9 - - + +
207K SER 5.1 8.8 + - - +
208K ALA* 5.6 4.2 - - - +
209K PRO* 4.8 21.7 - - + +
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Residues in contact with ARG 161 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157K LEU 2.8 16.0 + - - +
158K ARG* 3.1 22.7 - - + +
160K LYS* 1.3 69.4 - - - +
162K LYS* 1.3 69.7 + - - +
164K ILE* 3.0 45.0 + - - +
165K SER* 2.8 35.7 + - - +
168K ALA* 3.8 8.5 - - - +
199K SER* 3.1 38.8 + - - -
200K TYR* 3.9 21.0 - - - +
201K TYR* 2.8 22.5 + - + +
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Residues in contact with LYS 162 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158K ARG* 3.0 46.3 + - + +
159K LEU* 3.2 28.7 - - + +
160K LYS 2.9 0.6 + - - -
161K ARG* 1.3 91.2 - - - +
163K ASP* 1.3 63.3 + - - +
164K ILE 3.4 0.2 + - - -
165K SER* 3.6 15.6 + - - -
166K GLU* 3.9 6.1 + - - +
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Residues in contact with ASP 163 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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159K LEU 3.0 9.5 + - - +
160K LYS* 2.5 18.3 + - + +
162K LYS* 1.3 74.1 - - - +
164K ILE* 1.3 61.8 + - + +
166K GLU* 3.4 9.8 + - - +
167K ALA* 3.1 23.4 + - - +
209K PRO* 4.7 15.5 - - + +
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Residues in contact with ILE 164 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160K LYS* 2.8 17.4 + - + +
161K ARG* 3.1 17.7 - - - +
163K ASP* 1.3 82.0 - - + +
165K SER* 1.3 54.7 + - - +
167K ALA* 4.0 10.3 - - + -
168K ALA* 2.7 49.4 + - + +
201K TYR* 3.1 28.0 - - + +
206K ILE* 3.6 28.3 - - + -
209K PRO* 3.4 45.3 - - + +
212K PHE* 5.7 0.7 - - + -
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Residues in contact with SER 165 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161K ARG* 2.8 28.4 + - - +
162K LYS* 3.8 11.4 - - - -
164K ILE* 1.3 77.9 - - - +
166K GLU* 1.3 57.4 + - - +
168K ALA* 4.1 1.0 - - - +
169K GLU* 2.8 43.6 + - - +
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Residues in contact with GLU 166 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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162K LYS 3.9 5.8 + - - +
163K ASP* 3.4 10.9 + - - +
164K ILE 3.3 0.2 - - - -
165K SER* 1.3 77.6 + - - +
167K ALA* 1.3 66.3 + - - +
169K GLU* 3.3 6.1 + - + +
170K THR* 3.0 26.0 + - - +
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Residues in contact with ALA 167 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163K ASP* 3.1 17.3 + - - +
164K ILE* 4.0 19.7 - - + -
166K GLU* 1.3 74.9 - - - +
168K ALA* 1.3 57.0 + - - +
170K THR* 3.1 11.7 - - - +
171K VAL* 3.0 31.2 + - - +
209K PRO* 4.6 10.1 - - + +
301K PRO* 5.8 3.6 - - + -
304K ILE* 4.2 12.6 - - + +
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Residues in contact with ALA 168 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161K ARG* 3.8 12.8 - - - +
164K ILE* 2.7 31.4 + - + +
165K SER* 4.1 1.8 - - - +
167K ALA* 1.3 72.3 - - - +
169K GLU* 1.3 63.4 + - - +
171K VAL* 3.5 10.3 - - + -
172K ASN* 2.7 45.3 + - - +
199K SER* 4.7 7.4 - - - +
212K PHE* 4.9 12.8 - - + -
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Residues in contact with GLU 169 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165K SER* 2.8 34.3 + - - +
166K GLU* 3.8 5.8 - - - +
167K ALA 3.3 0.2 - - - -
168K ALA* 1.3 78.5 - - - +
170K THR* 1.3 58.0 + - - +
172K ASN* 3.6 11.6 - - - +
173K LYS* 2.8 57.7 + - + +
199K SER* 5.6 2.3 + - - -
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Residues in contact with THR 170 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166K GLU* 3.0 16.8 + - - +
167K ALA* 3.1 16.6 - - - +
169K GLU* 1.3 77.0 - - - +
171K VAL* 1.3 66.7 - - - +
173K LYS* 3.2 6.8 + - - +
174K VAL* 3.1 22.8 + - - +
280K ILE* 5.1 8.2 - - - +
298K ILE* 5.8 1.3 - - + +
300K ASN* 3.6 29.1 + - - +
301K PRO* 4.6 4.9 - - + -
304K ILE* 3.5 24.0 - - + -
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Residues in contact with VAL 171 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167K ALA 3.0 14.1 + - - +
168K ALA* 3.2 18.4 - - - +
170K THR* 1.3 82.5 - - - +
172K ASN* 1.3 72.5 + - - +
174K VAL* 2.9 23.1 - - + +
175K VAL* 2.9 14.6 + - + +
212K PHE* 4.0 26.2 - - + -
298K ILE* 4.0 11.2 - - + -
304K ILE* 3.7 28.9 - - + -
306K VAL* 3.9 29.4 - - + -
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Residues in contact with ASN 172 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168K ALA* 2.7 36.7 + - - +
169K GLU* 3.6 14.1 - - - +
171K VAL* 1.3 73.3 - - - +
173K LYS* 1.3 67.2 + - - +
175K VAL* 3.0 15.4 - - - +
176K GLU* 2.8 30.5 + - - +
199K SER* 4.5 8.1 + - - -
212K PHE* 4.1 23.9 - - - -
214K VAL* 5.7 4.0 - - - +
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Residues in contact with LYS 173 (chain K).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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169K GLU* 2.8 46.0 + - + +
170K THR* 3.7 6.3 - - - +
171K VAL 3.2 0.2 - - - -
172K ASN* 1.3 83.3 - - - +
174K VAL* 1.3 59.3 + - - +
176K GLU* 3.3 21.6 + - - +
177K ARG* 2.9 28.2 + - - +
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Residues in contact with VAL 174 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170K THR 3.1 13.8 + - - +
171K VAL* 2.9 25.8 - - + +
173K LYS* 1.3 76.6 - - - +
175K VAL* 1.3 61.2 + - + +
177K ARG* 3.2 36.8 + - - +
178K LEU* 2.9 27.0 + - + +
274K VAL* 5.3 3.4 - - + -
279K ASP* 5.7 0.7 - - - +
280K ILE* 3.5 21.8 - - + -
282K VAL* 4.5 12.1 - - + -
296K LEU* 5.3 5.2 - - + -
298K ILE* 3.7 20.0 - - + -
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Residues in contact with VAL 175 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171K VAL* 2.9 20.7 + - + +
172K ASN* 3.0 35.0 - - - +
174K VAL* 1.3 76.0 - - + +
176K GLU* 1.3 61.1 + - + +
178K LEU* 3.1 18.0 + - + +
179K LEU* 2.8 26.9 + - - +
194K GLN* 6.3 3.8 - - + -
212K PHE* 6.0 2.0 - - + -
214K VAL* 5.0 11.9 - - + -
216K PHE* 4.6 21.1 - - + -
296K LEU* 5.7 2.7 - - + -
306K VAL* 4.4 33.2 - - + -
308K ILE* 5.5 2.5 - - + -
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Residues in contact with GLU 176 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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172K ASN 2.8 19.5 + - - +
173K LYS* 3.6 23.8 - - - +
175K VAL* 1.3 76.0 - - + +
177K ARG* 1.3 64.8 + - - +
179K LEU* 3.1 14.2 + - + +
180K ARG* 3.0 35.9 + - - +
194K GLN* 6.2 1.3 - - - -
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Residues in contact with ARG 177 (chain K).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173K LYS 2.9 15.1 + - - +
174K VAL* 3.2 35.3 + - - +
176K GLU* 1.3 80.1 + - - +
178K LEU* 1.3 69.8 + - - +
180K ARG* 3.2 6.8 + - - +
181K ARG* 3.0 48.1 + - + +
274K VAL* 5.1 7.1 + - - +
277K ILE* 3.2 41.3 + - - +
279K ASP* 2.7 41.7 + - - +
280K ILE* 3.9 1.2 - - - +
282K VAL* 3.9 14.1 - - - +
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Residues in contact with LEU 178 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174K VAL* 2.9 14.2 + - + +
175K VAL* 3.1 19.1 - - + +
177K ARG* 1.3 82.6 - - - +
179K LEU* 1.3 57.5 + - - +
181K ARG* 3.1 2.3 + - - -
182K MET* 2.8 70.4 + - + +
216K PHE* 3.8 27.6 - - + -
266K PHE* 6.3 0.7 - - + -
270K ILE* 4.3 15.7 - - + -
274K VAL* 3.6 31.2 - - + -
296K LEU* 4.2 14.1 - - + -
308K ILE* 5.5 1.6 - - + -
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Residues in contact with LEU 179 (chain K).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175K VAL 2.8 12.9 + - - +
176K GLU* 3.1 15.7 + - + +
178K LEU* 1.3 77.5 - - - +
180K ARG* 1.3 63.4 + - - +
182K MET* 3.3 16.2 + - - +
183K GLN* 3.1 43.8 + - - +
192K VAL 4.0 13.9 - - - +
193K GLU* 4.1 8.5 - - + -
194K GLN* 3.3 50.7 - - + +
216K PHE* 5.5 4.3 - - + -
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Residues in contact with ARG 180 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176K GLU* 3.0 22.8 + - - +
177K ARG* 3.5 10.3 - - - +
179K LEU* 1.3 78.5 - - - +
181K ARG* 1.3 64.8 + - + +
183K GLN* 3.1 46.1 + - - +
184K LYS* 3.8 39.6 + - - +
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Residues in contact with ARG 181 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177K ARG* 3.0 38.1 + - + +
178K LEU* 3.1 5.1 + - - +
180K ARG* 1.3 77.1 - - + +
182K MET* 1.3 77.6 + - + +
184K LYS* 3.2 14.9 + - - +
185K ARG* 3.2 14.9 + - - +
273K GLU* 4.5 2.0 - - + +
277K ILE* 3.3 51.9 - - - +
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Residues in contact with MET 182 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178K LEU* 2.8 67.3 + - + +
179K LEU* 3.3 7.1 + - - +
181K ARG* 1.3 87.1 - - + +
183K GLN* 1.3 63.8 + - + +
184K LYS 3.4 0.3 + - - -
185K ARG* 3.7 13.9 + - - +
187K SER* 5.5 1.0 + - - -
189K PHE* 3.7 17.5 - - + +
190K LYS* 3.7 9.5 - - - +
192K VAL* 5.2 13.9 - - + +
216K PHE* 5.8 1.6 - - + -
266K PHE* 6.5 1.1 - - - -
270K ILE* 5.3 3.4 - - - -
273K GLU* 3.1 57.4 - - + +
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Residues in contact with GLN 183 (chain K).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179K LEU* 3.1 41.1 + - + +
180K ARG* 3.1 43.1 + - - +
181K ARG 3.2 1.0 - - - -
182K MET* 1.3 80.3 - - + +
184K LYS* 1.3 61.1 + - - +
185K ARG 4.5 0.7 - - - -
190K LYS* 3.6 32.1 + - - +
191K GLY* 5.2 4.5 - - - -
192K VAL 5.1 4.6 - - - +
193K GLU* 5.0 10.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il