Contacts of the helix formed by residues 175 - 223 (chain C) in PDB entry 6XWQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 175 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299A LYS* 4.1 8.8 + - - -
173C ARG* 3.3 32.1 + - - +
174C ASN* 1.3 75.5 - - - +
176C GLU* 1.3 61.5 + - - +
177C ARG* 2.4 50.8 + - + -
178C VAL* 2.9 33.1 + - + +
179C ARG* 3.3 11.0 + - - +
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Residues in contact with GLU 176 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174C ASN 3.1 6.5 + - - +
175C GLU* 1.3 72.6 - - - +
177C ARG* 1.3 60.6 + - - +
178C VAL 3.3 0.5 + - - -
179C ARG* 2.4 47.8 + - - +
180C LYS* 3.4 57.2 + - + +
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Residues in contact with ARG 177 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A VAL* 6.0 0.8 - - - +
187A ARG* 5.8 1.6 - - - +
190A ASP* 3.5 36.6 + - - +
194A GLU* 4.0 17.2 + - - -
299A LYS* 3.6 28.8 - - - +
175C GLU* 2.4 40.2 + - + +
176C GLU* 1.3 76.6 - - - +
178C VAL* 1.3 65.7 + - + +
180C LYS* 4.4 3.9 - - - +
181C SER* 3.4 19.4 + - - -
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Residues in contact with VAL 178 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190A ASP* 5.5 0.4 - - - +
194A GLU* 4.0 34.8 - - + +
170C LEU* 3.7 32.1 - - + -
173C ARG* 4.1 20.0 - - + +
175C GLU* 2.9 26.5 + - + +
177C ARG* 1.3 95.3 - - + +
179C ARG* 1.3 60.8 + - - +
180C LYS 3.3 1.1 - - - -
181C SER* 2.8 19.9 + - - +
182C ALA* 2.9 15.6 + - - +
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Residues in contact with ARG 179 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170C LEU 4.5 11.4 + - - +
171C MET* 3.9 24.6 + - + +
172C ASN* 4.7 2.4 - - - +
173C ARG* 2.7 34.9 + - - +
174C ASN* 3.8 15.2 + - - +
175C GLU 3.3 6.5 + - - +
176C GLU* 2.4 49.8 + - - +
178C VAL* 1.3 79.4 - - - +
180C LYS* 1.3 60.4 + - + +
182C ALA* 3.3 3.1 + - - +
183C GLU* 2.9 35.4 + - + +
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Residues in contact with LYS 180 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187A ARG* 4.1 23.8 + - - +
176C GLU* 3.4 46.9 + - + +
177C ARG* 4.7 2.9 - - - +
178C VAL 3.3 0.4 - - - -
179C ARG* 1.3 79.4 - - + +
181C SER* 1.3 58.0 + - - +
183C GLU* 4.1 8.5 - - + +
184C THR* 3.0 23.7 + - - -
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Residues in contact with SER 181 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187A ARG* 3.2 34.9 - - - +
190A ASP* 4.0 9.5 + - - -
191A GLY* 3.4 19.2 + - - -
194A GLU* 5.0 0.2 - - - +
177C ARG 3.4 16.3 + - - -
178C VAL* 2.8 24.9 + - - +
179C ARG 3.1 0.2 - - - -
180C LYS* 1.3 78.7 - - - +
182C ALA* 1.3 60.0 + - - +
183C GLU 3.3 0.2 - - - -
184C THR* 3.2 4.0 + - - -
185C LEU* 2.9 28.6 + - - +
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Residues in contact with ALA 182 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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191A GLY* 4.3 4.7 - - - -
167C ILE* 4.1 11.8 - - + +
170C LEU* 3.6 35.4 - - + -
171C MET* 4.0 15.0 - - + +
178C VAL 2.9 16.5 + - - +
179C ARG 3.8 3.6 - - - +
181C SER* 1.3 76.0 + - - +
183C GLU* 1.3 59.9 + - - +
185C LEU* 3.3 6.2 + - - +
186C LEU* 2.9 31.2 + - - +
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Residues in contact with GLU 183 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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171C MET* 4.1 25.1 - - - +
179C ARG* 2.9 24.7 + - + +
180C LYS* 4.3 8.1 - - - +
182C ALA* 1.3 75.9 - - - +
184C THR* 1.3 57.6 + - - +
186C LEU* 3.4 8.3 + - - +
187C ARG* 2.9 61.8 + - - +
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Residues in contact with THR 184 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184A THR* 3.9 24.2 - - + +
187A ARG* 3.5 23.7 + - + +
188A VAL* 3.6 26.7 - - + +
184B THR* 4.0 7.0 - - + +
180C LYS 3.0 19.4 + - - -
181C SER* 3.2 8.1 + - - -
183C GLU* 1.3 79.9 - - - +
185C LEU* 1.3 56.2 + - - +
187C ARG* 3.3 16.8 + - - +
188C VAL* 2.9 27.4 + - - +
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Residues in contact with LEU 185 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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188A VAL* 4.1 27.8 - - + +
191A GLY* 3.8 4.7 - - - +
192A LEU* 3.6 45.1 - - + +
195A ALA* 5.2 0.9 - - + -
163C LEU* 5.1 1.6 - - + -
167C ILE* 4.0 24.2 - - + -
181C SER 2.9 16.2 + - - +
182C ALA* 3.9 5.8 - - - +
184C THR* 1.3 77.3 - - - +
186C LEU* 1.3 63.2 + - - +
188C VAL* 3.2 11.4 + - + +
189C PHE* 3.0 46.6 + - + +
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Residues in contact with LEU 186 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C VAL* 4.6 5.2 - - + +
70C VAL* 4.2 24.5 - - + +
73C ALA* 3.6 33.7 - - + +
74C SER* 4.9 7.2 - - - +
167C ILE* 4.1 11.8 - - + +
171C MET* 3.8 32.3 - - + -
182C ALA 2.9 17.9 + - - +
183C GLU* 3.7 10.8 - - - +
185C LEU* 1.3 77.6 - - - +
187C ARG* 1.3 59.3 + - + +
189C PHE* 3.3 3.2 + - - -
190C ASP* 2.9 28.8 + - + +
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Residues in contact with ARG 187 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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187A ARG* 4.5 4.8 - - - +
177B ARG 5.8 2.5 - - - +
180B LYS* 4.8 27.7 + - - +
181B SER* 3.2 24.3 - - - +
184B THR* 3.1 28.5 + - + +
187B ARG* 4.5 9.9 - - - +
183C GLU* 2.9 45.2 + - - +
184C THR* 3.9 21.1 + - - +
186C LEU* 1.3 75.7 - - + +
188C VAL* 1.3 60.6 + - - +
190C ASP* 4.1 7.0 - - + +
191C GLY 2.9 24.3 + - - -
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Residues in contact with VAL 188 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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188A VAL* 3.6 13.7 - - + -
184B THR* 3.6 13.9 - - + +
185B LEU* 4.1 23.7 - - + +
188B VAL* 3.5 33.7 - - + -
184C THR 2.9 18.3 + - - +
185C LEU* 3.2 17.2 + - + +
187C ARG* 1.3 78.0 - - - +
189C PHE* 1.3 69.2 + - + +
191C GLY* 3.3 2.4 + - - -
192C LEU* 2.9 27.9 + - + +
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Residues in contact with PHE 189 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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192A LEU* 6.3 0.2 - - + -
65C LEU* 4.7 20.0 - - + -
66C ALA* 3.7 10.2 - - + +
69C VAL* 3.3 32.1 - - + -
70C VAL* 3.5 13.8 - - + +
163C LEU* 3.7 28.7 - - + -
167C ILE* 4.9 0.9 - - + -
185C LEU* 3.0 36.6 + - + +
186C LEU* 3.9 4.3 - - - +
188C VAL* 1.3 86.0 - - + +
190C ASP* 1.3 57.2 + - - +
192C LEU* 3.3 25.0 + - + +
193C ALA* 2.9 29.6 + - - +
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Residues in contact with ASP 190 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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177B ARG* 3.4 46.5 + - - +
181B SER* 4.0 8.4 - - - -
70C VAL* 3.5 26.0 - - + +
186C LEU* 2.9 19.7 + - + +
187C ARG* 3.7 7.6 - - - +
188C VAL 3.2 0.2 - - - -
189C PHE* 1.3 74.2 - - - +
191C GLY* 1.3 60.5 + - - +
193C ALA* 3.3 4.1 + - - +
194C GLU* 2.9 35.8 + - - +
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Residues in contact with GLY 191 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170B LEU* 3.8 5.3 - - - +
181B SER* 3.4 29.9 - - - -
182B ALA* 4.2 5.6 - - - -
185B LEU* 3.9 8.3 - - - +
187C ARG 2.9 12.4 + - - -
188C VAL 3.7 3.1 - - - -
190C ASP* 1.3 75.2 - - - +
192C LEU* 1.3 56.6 + - - +
194C GLU* 4.6 2.2 - - - -
195C ALA* 2.9 30.8 + - - +
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Residues in contact with LEU 192 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145B PHE* 5.7 4.7 - - + -
159B PHE* 5.6 1.3 - - + -
163B LEU* 4.2 19.1 - - + -
185B LEU* 3.6 16.7 - - + +
189B PHE* 6.3 0.7 - - + -
62C PRO* 5.0 8.3 - - + +
65C LEU* 5.5 6.5 - - + -
66C ALA* 3.9 16.8 - - + -
188C VAL* 2.9 14.9 + - + +
189C PHE* 3.6 26.5 - - + +
190C ASP 3.2 0.2 - - - -
191C GLY* 1.3 76.1 - - - +
193C ALA* 1.3 58.3 + - - +
195C ALA* 3.3 1.8 + - - +
196C MET* 2.9 58.4 + - + +
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Residues in contact with ALA 193 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63C ILE* 5.5 1.6 - - - +
66C ALA* 3.8 16.7 - - + +
67C SER* 4.0 22.4 - - - +
70C VAL* 4.7 4.5 - - + -
189C PHE 2.9 16.7 + - - +
190C ASP* 3.3 8.5 + - - +
192C LEU* 1.3 75.3 - - - +
194C GLU* 1.3 59.3 + - + +
196C MET* 3.2 6.6 + - - +
197C TYR* 2.9 43.1 + - + +
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Residues in contact with GLU 194 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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170B LEU* 3.7 8.7 - - + -
173B ARG* 4.4 14.9 + - - -
177B ARG* 4.0 21.2 + - - +
178B VAL* 3.5 36.6 - - + +
190C ASP* 2.9 30.3 + - - +
191C GLY 3.9 0.9 - - - +
193C ALA* 1.3 75.3 - - + +
195C ALA* 1.3 64.4 + - - +
197C TYR* 3.2 24.6 + - + +
198C LEU* 3.0 31.7 + - - +
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Residues in contact with ALA 195 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163B LEU* 3.7 25.6 - - + -
166B ALA* 3.6 17.0 - - + +
167B ILE* 4.5 8.7 - - + -
170B LEU* 3.3 14.8 - - + +
185B LEU* 5.2 0.4 - - + -
191C GLY 2.9 18.9 + - - +
192C LEU* 3.7 4.7 - - - +
194C GLU* 1.3 75.6 - - - +
196C MET* 1.3 57.7 + - - +
198C LEU* 3.3 1.4 + - - -
199C ILE* 2.9 34.0 + - - +
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Residues in contact with MET 196 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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159B PHE* 3.4 38.8 - - + -
163B LEU* 4.1 9.6 - - + -
59C LEU* 4.0 23.8 - - - -
62C PRO* 3.6 26.7 - - + -
63C ILE* 3.5 26.9 - - + +
192C LEU* 2.9 36.2 + - + +
193C ALA* 3.5 8.1 - - - +
195C ALA* 1.3 75.0 - - - +
197C TYR* 1.3 62.1 + - - +
199C ILE* 3.2 10.1 + - + +
200C VAL* 2.9 34.1 + - - +
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Residues in contact with TYR 197 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63C ILE* 4.1 24.7 - - + -
67C SER* 3.1 28.8 + - - -
193C ALA* 2.9 26.7 + - + +
194C GLU* 3.2 31.6 + - + +
196C MET* 1.3 78.4 - - - +
198C LEU* 1.3 59.7 + - + +
200C VAL* 3.3 5.0 + - - +
201C GLY* 2.9 24.8 + - - -
284C LEU* 4.5 11.5 - - + +
285C PRO* 4.4 28.8 - - + +
288C MET* 3.4 39.7 - - + +
307C PRO* 4.5 0.3 - - - +
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Residues in contact with LEU 198 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166B ALA* 4.4 15.5 - - + +
169B TYR* 4.9 17.3 - - + -
170B LEU* 3.6 26.2 - - + -
173B ARG* 4.0 16.2 - - - +
194C GLU* 3.0 23.2 + - - +
195C ALA* 3.6 9.2 - - - +
196C MET 3.3 0.2 - - - -
197C TYR* 1.3 79.2 - - + +
199C ILE* 1.3 55.6 + - - +
201C GLY* 3.1 3.6 + - - -
202C GLY* 3.0 24.9 + - - -
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Residues in contact with ILE 199 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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159B PHE* 5.3 0.9 - - + -
162B ILE* 3.8 48.5 - - + +
163B LEU* 4.2 10.1 - - + -
166B ALA* 3.7 15.3 - - + -
58C MET* 4.6 5.6 - - + -
59C LEU* 3.6 27.4 - - + -
195C ALA 2.9 20.3 + - - +
196C MET* 3.2 25.3 + - + +
198C LEU* 1.3 75.6 - - - +
200C VAL* 1.3 56.7 + - - +
202C GLY* 3.2 3.0 + - - +
203C VAL* 2.9 31.2 + - + +
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Residues in contact with VAL 200 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56C LEU* 5.5 0.9 - - + -
59C LEU* 3.6 20.6 - - + -
63C ILE* 3.4 27.1 - - + -
196C MET 2.9 21.4 + - - +
197C TYR* 3.7 5.4 - - - +
199C ILE* 1.3 73.9 - - - +
201C GLY* 1.3 61.1 + - - +
203C VAL* 3.7 1.9 - - + +
204C MET* 2.8 32.6 + - + +
281C SER 5.0 2.2 - - - +
282C GLY* 3.3 30.3 - - - +
285C PRO* 3.6 26.7 - - + -
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Residues in contact with GLY 201 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14C VAL* 5.5 0.2 - - - +
197C TYR 2.9 14.2 + - - -
198C LEU* 3.1 5.8 + - - -
200C VAL* 1.3 76.5 - - - +
202C GLY* 1.3 56.4 + - - +
204C MET* 3.3 7.7 + - - +
205C GLN* 2.9 33.7 + - - +
285C PRO* 4.7 5.8 - - - +
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Residues in contact with GLY 202 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198C LEU 3.0 13.1 + - - -
199C ILE* 3.2 4.2 + - - -
201C GLY* 1.3 76.4 - - - +
203C VAL* 1.3 62.2 + - - +
205C GLN* 3.1 11.2 + - - +
206C TYR* 3.0 22.0 + - - +
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Residues in contact with VAL 203 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C PHE* 3.8 18.2 - - + -
55C LEU* 4.2 28.0 - - + -
56C LEU* 3.7 30.1 - - + -
58C MET* 5.1 0.9 - - + -
59C LEU* 3.6 19.5 - - + -
199C ILE* 2.9 23.9 + - + +
200C VAL* 3.3 4.7 + - - +
202C GLY* 1.3 74.6 - - - +
204C MET* 1.3 60.7 + - + +
206C TYR* 3.2 9.4 + - - +
207C ALA* 2.8 24.4 + - - +
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Residues in contact with MET 204 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14C VAL* 3.4 23.3 - - + +
18C ILE* 5.0 2.6 - - - +
52C PHE* 4.2 6.1 - - + -
56C LEU* 4.0 9.4 - - + -
200C VAL* 2.8 23.0 + - + +
201C GLY* 3.7 7.0 - - - +
203C VAL* 1.3 91.6 - - + +
205C GLN* 1.3 65.8 + - - +
207C ALA* 3.0 22.6 + - - +
208C PRO* 3.3 7.4 - - - +
273C THR* 4.5 14.6 - - + -
277C THR* 3.7 28.0 - - - +
282C GLY 3.2 28.0 - - - +
283C THR* 5.4 0.2 - - - -
285C PRO* 5.5 2.0 - - + -
286C VAL* 5.2 13.2 - - + -
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Residues in contact with GLN 205 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9C TYR* 2.3 35.3 + - + -
10C LEU* 3.1 55.6 + - + +
12C TYR 5.4 0.2 + - - -
14C VAL* 4.3 17.4 - - + +
17C LYS* 3.1 15.5 + - - +
201C GLY 2.9 19.8 + - - +
202C GLY* 3.4 11.4 - - - +
204C MET* 1.3 74.8 - - - +
206C TYR* 1.3 51.4 + - - +
208C PRO* 3.5 0.2 - - - +
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Residues in contact with TYR 206 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C TYR* 3.3 9.1 + + - -
48C PHE* 3.8 20.6 + - - +
51C LEU* 3.3 27.6 - - + +
52C PHE* 3.9 39.0 - + + -
55C LEU* 4.3 15.9 - - + -
202C GLY 3.0 11.9 + - - +
203C VAL* 3.5 9.6 - - - +
205C GLN* 1.3 76.2 - - - +
207C ALA* 1.3 63.7 + - - +
208C PRO* 3.2 2.7 - - - -
209C ILE* 3.2 42.0 + - + +
210C GLY* 3.6 2.6 + - - -
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Residues in contact with ALA 207 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18C ILE* 3.4 19.7 - - + +
52C PHE* 3.4 29.7 - - + -
203C VAL 2.8 11.9 + - - +
204C MET* 3.0 29.1 + - - +
206C TYR* 1.3 77.2 - - - +
208C PRO* 1.3 57.7 - - - +
210C GLY* 3.1 1.3 + - - -
211C VAL* 2.9 27.0 + - - +
277C THR* 4.9 0.7 - - - +
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Residues in contact with PRO 208 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C TYR* 3.7 6.5 - - + +
14C VAL 5.1 0.4 - - - +
17C LYS* 3.2 48.0 - - + +
18C ILE* 3.6 25.6 - - + +
21C GLY* 4.3 9.2 - - - -
204C MET 3.3 12.6 - - - +
205C GLN 3.5 7.4 - - - +
206C TYR 3.4 4.3 - - - -
207C ALA* 1.3 89.3 - - + +
209C ILE* 1.3 56.9 + - - +
211C VAL* 3.3 2.7 + - + +
212C PHE* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 209 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9C TYR* 4.2 11.7 + - + +
48C PHE* 4.3 25.8 - - + +
206C TYR* 3.2 44.9 + - + +
208C PRO* 1.3 78.5 - - - +
210C GLY* 1.3 62.9 + - - +
212C PHE* 4.0 14.0 + - + +
213C ALA* 3.5 17.8 + - - +
----------------------------------------------------------
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Residues in contact with GLY 210 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C PHE 4.5 6.1 - - - -
49C GLY* 3.8 1.0 - - - -
52C PHE* 4.1 28.3 - - - -
206C TYR* 3.6 4.4 + - - -
207C ALA 3.1 6.7 + - - -
209C ILE* 1.3 84.5 - - - +
211C VAL* 1.3 60.3 + - - +
213C ALA* 3.2 7.0 + - - +
214C LEU* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 211 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18C ILE* 3.7 9.6 - - + -
22C LEU* 3.8 44.9 - - + +
52C PHE* 4.7 9.6 - - + -
207C ALA 2.9 19.6 + - - +
208C PRO* 3.9 3.1 - - + +
210C GLY* 1.3 73.1 - - - +
212C PHE* 1.3 59.8 + - - +
213C ALA 3.0 5.3 + - - -
214C LEU* 4.3 7.6 - - + +
215C ILE* 2.9 32.9 + - + +
276C VAL* 3.7 34.5 - - + +
277C THR* 4.6 5.8 - - - -
399C MET* 6.1 0.4 - - - -
----------------------------------------------------------
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Residues in contact with PHE 212 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21C GLY* 4.0 14.8 + - - +
24C LEU* 3.8 19.3 - - + -
25C GLY* 3.5 20.2 - - - -
28C PHE* 3.6 48.2 - + + -
45C ILE* 4.4 11.0 - - + +
208C PRO 2.9 18.1 + - - +
209C ILE* 4.2 14.1 - - + +
210C GLY 3.4 0.2 - - - -
211C VAL* 1.3 76.3 - - - +
213C ALA* 1.3 57.9 + - - +
216C ALA* 3.0 21.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 213 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C ILE* 3.6 29.4 - - + +
46C LYS* 5.1 1.5 - - - -
48C PHE* 3.6 11.4 - - + -
49C GLY* 3.3 27.6 - - - +
209C ILE 3.5 6.2 + - - +
210C GLY 3.2 5.1 + - - +
211C VAL 3.0 1.4 - - - -
212C PHE* 1.3 78.5 - - - +
214C LEU* 1.3 67.2 + - - +
215C ILE 3.5 0.2 - - - -
216C ALA* 3.8 0.5 - - - +
217C TYR* 2.9 28.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 214 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C LYS* 5.5 2.9 - - + +
49C GLY* 3.7 31.0 - - - +
50C ASP* 4.5 1.3 - - - +
52C PHE* 4.4 14.8 - - + -
53C VAL* 3.7 24.7 - - + -
210C GLY 2.9 14.1 + - - +
211C VAL* 4.1 7.2 - - + +
213C ALA* 1.3 77.8 - - - +
215C ILE* 1.3 58.5 + - - +
217C TYR* 3.8 9.8 - - + +
218C VAL* 2.9 37.1 + - + +
278C ARG* 4.6 32.1 - - + +
359C PRO* 5.4 1.3 - - + -
----------------------------------------------------------
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Residues in contact with ILE 215 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22C LEU* 3.7 32.5 - - + +
25C GLY* 3.7 24.5 - - - -
26C ALA* 5.1 3.8 - - + +
211C VAL* 2.9 25.7 + - + +
214C LEU* 1.3 76.0 - - - +
216C ALA* 1.3 59.8 + - - +
218C VAL* 3.7 8.2 - - + +
219C MET* 2.9 37.7 + - + +
395C ALA* 5.2 2.2 - - + -
396C ILE* 3.8 24.9 - - + -
399C MET* 3.6 27.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 216 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25C GLY* 3.5 19.3 - - - +
28C PHE* 3.5 30.7 - - + -
29C GLY* 3.6 4.1 - - - +
41C VAL* 5.6 0.9 - - - -
45C ILE* 5.4 1.8 - - + -
212C PHE 3.0 24.5 - - - +
213C ALA* 3.4 3.0 + - - +
214C LEU 3.2 0.6 - - - -
215C ILE* 1.3 80.2 - - - +
217C TYR* 1.3 60.1 + - - +
219C MET 3.4 0.2 + - - -
220C ALA* 2.9 32.0 + - - +
----------------------------------------------------------
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Residues in contact with TYR 217 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C ALA 5.2 1.1 - - - -
41C VAL* 4.9 12.3 - - + +
42C LYS* 3.8 47.0 - - + +
45C ILE* 5.8 1.7 - - + +
46C LYS* 4.3 39.5 - - + +
213C ALA 2.9 18.5 + - - +
214C LEU* 3.8 11.2 - - + +
216C ALA* 1.3 73.4 - - - +
218C VAL* 1.3 78.3 + - + +
220C ALA* 4.7 3.4 - - - -
221C GLU* 2.9 50.4 + - + +
222C GLN* 5.6 1.2 + - - -
----------------------------------------------------------
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Residues in contact with VAL 218 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214C LEU* 2.9 25.0 + - + +
215C ILE* 3.7 8.3 - - + +
217C TYR* 1.3 88.5 - - + +
219C MET* 1.3 61.1 + - + +
222C GLN* 2.7 50.1 + - + +
278C ARG* 5.3 2.0 - - - +
392C GLY 5.1 3.1 - - - +
395C ALA* 3.7 25.4 - - + -
396C ILE* 3.8 32.3 - - + -
----------------------------------------------------------
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Residues in contact with MET 219 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C ALA* 4.0 24.7 - - + +
29C GLY* 3.7 17.7 - - - -
30C LEU* 3.7 21.5 - - + -
215C ILE* 2.9 26.3 + - + +
216C ALA* 3.7 4.0 - - - +
218C VAL* 1.3 78.9 - - + +
220C ALA* 1.3 58.1 + - - +
221C GLU 3.0 0.5 + - - -
222C GLN* 3.0 8.4 + - + +
223C GLY* 2.4 40.8 + - - +
226C VAL* 5.4 10.5 - - + -
396C ILE* 4.2 26.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 220 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28C PHE* 6.3 0.2 - - + -
29C GLY* 3.4 20.6 + - - +
32C ALA* 3.7 20.0 - - + -
33C GLY* 4.3 12.7 - - - +
38C ALA* 3.4 19.3 - - + +
41C VAL* 3.8 21.3 - - + -
216C ALA 2.9 20.3 + - - +
217C TYR 4.1 0.9 - - - +
219C MET* 1.3 71.9 - - - +
221C GLU* 1.3 59.7 + - - +
223C GLY* 4.2 2.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU 221 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C ALA* 4.5 13.4 - - + +
42C LYS* 5.3 6.2 - - - +
217C TYR* 2.9 46.4 + - + +
220C ALA* 1.3 79.9 - - - +
222C GLN* 1.3 83.6 + - - +
223C GLY 3.5 1.2 + - - -
224C VAL 5.2 0.5 + - - -
225C ARG* 4.8 10.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 222 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217C TYR* 5.6 1.3 + - - -
218C VAL* 2.7 52.2 + - + +
219C MET* 3.1 9.1 - - + +
221C GLU* 1.3 95.2 - - - +
223C GLY* 1.3 62.5 + - - +
224C VAL 3.1 4.4 + - - -
225C ARG* 3.2 57.1 + - + +
226C VAL* 3.8 20.8 - - + +
392C GLY* 4.0 26.1 + - - +
393C ILE* 5.3 3.6 - - + -
----------------------------------------------------------
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Residues in contact with GLY 223 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C GLY 5.9 0.9 - - - -
30C LEU* 5.6 7.7 - - - +
33C GLY* 6.0 4.9 - - - -
219C MET* 2.4 29.6 + - - -
220C ALA* 4.2 3.4 + - - -
221C GLU 3.5 3.6 + - - -
222C GLN* 1.3 70.9 - - - +
224C VAL* 1.3 64.7 + - - +
226C VAL* 4.2 10.4 - - - +
227C VAL* 5.4 0.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il