Contacts of the helix formed by residues 381 - 420 (chain C) in PDB entry 6XWQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 381 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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376C ASP* 2.9 35.2 + - - -
378C THR* 3.3 10.9 + - - +
379C PRO 3.8 1.4 - - - +
380C GLY* 1.3 78.7 - - - +
382C PRO* 1.3 72.8 - - - +
383C VAL* 3.0 17.5 - - - -
384C ALA* 3.1 19.2 + - - +
385C LEU 4.1 1.0 + - - -
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Residues in contact with PRO 382 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117C LEU* 3.5 39.1 - - + +
118C GLY 4.6 1.6 - - - +
119C SER* 4.2 28.0 - - - +
332C ILE* 4.5 8.1 - - + -
380C GLY 4.3 2.2 - - - +
381C SER* 1.3 85.7 - - - +
383C VAL* 1.3 59.4 + - + +
384C ALA 3.1 0.4 - - - -
385C LEU* 2.9 27.1 + - + +
386C ALA 3.0 10.7 + - - -
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Residues in contact with VAL 383 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119C SER* 5.9 0.2 - - - -
328C VAL* 5.0 8.8 - - + +
332C ILE* 4.1 17.0 - - + -
370C LEU* 5.3 6.1 - - + +
375C LEU* 3.5 31.0 - - + -
376C ASP* 3.2 49.4 - - - +
377C LEU* 4.3 7.0 - - + -
378C THR 4.4 1.3 - - - +
381C SER* 3.0 10.5 - - - -
382C PRO* 1.3 78.8 - - + +
384C ALA* 1.3 59.9 + - - +
386C ALA* 3.4 8.7 + - - +
387C TYR* 2.8 30.7 + - - +
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Residues in contact with ALA 384 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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377C LEU 5.1 3.4 - - - +
378C THR 3.8 4.0 - - - +
379C PRO* 3.7 31.6 - - + +
381C SER 3.1 13.2 + - - +
382C PRO 3.1 0.4 - - - -
383C VAL* 1.3 82.2 - - - +
385C LEU* 1.3 56.3 + - - +
387C TYR* 3.3 7.5 + - - +
388C ALA* 2.9 29.5 + - - +
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Residues in contact with LEU 385 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C LEU* 3.7 28.7 - - + -
381C SER 4.1 0.8 + - - -
382C PRO* 2.9 17.4 + - + +
384C ALA* 1.3 79.9 - - - +
386C ALA* 1.3 56.6 + - - +
388C ALA* 3.3 8.6 + - + +
389C MET* 2.9 33.5 + - + +
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Residues in contact with ALA 386 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117C LEU* 3.8 15.8 - - + +
327C PHE* 4.2 10.2 - - + -
328C VAL* 4.1 26.2 - - + -
331C ALA* 5.1 4.5 - - + -
332C ILE* 5.5 2.0 - - + -
382C PRO 3.0 11.9 + - - +
383C VAL* 3.8 9.4 - - - +
385C LEU* 1.3 75.0 - - - +
387C TYR* 1.3 56.7 + - - +
389C MET* 3.2 11.5 + - + +
390C ILE* 2.9 34.8 + - - +
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Residues in contact with TYR 387 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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328C VAL* 5.1 3.1 - - - +
363C ALA* 2.3 34.0 + - + -
364C ILE* 3.6 12.1 + - - -
366C LEU* 4.3 15.9 - - + -
367C ALA* 3.8 18.3 + - + +
370C LEU* 3.8 22.9 - - + -
377C LEU* 4.4 15.7 - - + -
383C VAL 2.8 18.1 + - - +
384C ALA* 3.5 8.7 - - - +
385C LEU 3.2 0.2 - - - -
386C ALA* 1.3 76.6 - - - +
388C ALA* 1.3 58.0 + - - +
390C ILE* 3.3 7.4 + - - +
391C LEU* 2.9 48.9 + - + +
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Residues in contact with ALA 388 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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225C ARG* 4.5 12.3 + - - +
384C ALA 2.9 16.7 + - - +
385C LEU* 3.7 11.7 - - + +
387C TYR* 1.3 75.0 - - - +
389C MET* 1.3 61.4 + - - +
391C LEU* 3.3 8.9 + - - +
392C GLY* 2.9 26.7 + - - -
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Residues in contact with MET 389 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115C VAL* 3.8 33.0 - - + -
117C LEU* 4.9 3.6 - - + -
225C ARG* 4.8 11.8 - - - +
229C PRO* 5.8 8.3 - - + -
230C LEU* 3.3 51.5 - - + +
327C PHE* 3.6 25.6 - - + -
331C ALA* 5.8 0.4 - - + -
385C LEU* 2.9 15.8 + - + +
386C ALA* 3.2 17.0 + - + +
388C ALA* 1.3 76.2 - - - +
390C ILE* 1.3 63.9 + - - +
392C GLY* 3.6 6.2 + - - -
393C ILE* 4.1 0.5 + - - +
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Residues in contact with ILE 390 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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230C LEU* 4.5 5.2 - - + -
233C VAL* 4.2 22.0 - - + -
320C TYR* 3.2 31.0 - - + +
324C THR* 3.6 27.8 - - + +
327C PHE* 3.4 35.7 - - + -
328C VAL* 4.8 2.2 - - + -
363C ALA* 5.6 0.7 - - + -
366C LEU* 4.3 7.0 - - + -
386C ALA 2.9 20.9 + - - +
387C TYR* 3.7 6.3 - - - +
389C MET* 1.3 74.4 - - - +
391C LEU* 1.3 64.7 + - - +
392C GLY 2.9 6.2 + - - -
393C ILE* 3.0 8.8 + - + +
394C ASP* 2.9 17.3 + - - -
397C LEU* 4.8 3.6 - - + -
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Residues in contact with LEU 391 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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363C ALA* 4.6 13.9 - - + -
364C ILE* 6.5 1.3 - - + -
387C TYR* 2.9 40.9 + - + +
388C ALA* 3.3 8.0 + - - +
390C ILE* 1.3 76.3 - - - +
392C GLY* 1.3 64.1 + - - +
394C ASP* 3.2 26.7 - - + +
395C ALA 4.9 0.2 + - - -
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Residues in contact with GLY 392 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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218C VAL* 5.1 4.0 - - - +
222C GLN* 4.0 31.3 + - - +
225C ARG* 4.3 13.2 - - - -
230C LEU* 5.6 0.7 - - - -
388C ALA 2.9 15.0 + - - -
389C MET 3.9 4.9 - - - -
390C ILE 2.9 2.2 + - - -
391C LEU* 1.3 80.8 - - - +
393C ILE* 1.3 60.4 + - - -
394C ASP 3.2 2.1 + - - -
395C ALA* 4.3 6.6 + - - +
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Residues in contact with ILE 393 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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218C VAL* 6.2 0.2 - - - -
222C GLN* 5.3 6.1 - - + -
225C ARG* 4.5 2.9 - - - +
226C VAL* 4.1 26.2 - - + -
230C LEU* 3.7 58.8 - - + +
233C VAL* 4.2 14.8 - - + -
234C VAL* 4.5 12.3 - - + -
389C MET 4.1 1.1 + - - +
390C ILE* 3.8 9.6 - - + +
392C GLY* 1.3 72.7 - - - +
394C ASP* 1.3 64.6 + - - +
395C ALA 3.0 3.6 - - - +
396C ILE* 3.1 19.4 + - + +
397C LEU* 3.0 33.6 + - + +
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Residues in contact with ASP 394 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278C ARG* 4.3 3.8 + - - -
320C TYR* 4.0 3.6 + - - +
360C GLY* 3.8 21.2 - - - +
363C ALA* 3.7 21.5 - - + +
390C ILE 2.9 7.7 + - - +
391C LEU* 3.2 31.1 - - - +
392C GLY 3.2 0.8 - - - -
393C ILE* 1.3 77.7 - - - +
395C ALA* 1.3 57.8 + - - +
397C LEU* 3.4 7.7 + - - -
398C ASP* 2.9 25.3 + - - +
401C ARG* 3.0 27.2 + - - -
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Residues in contact with ALA 395 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215C ILE* 5.2 4.0 - - + -
218C VAL* 3.7 35.2 - - + -
278C ARG* 3.2 30.2 + - - +
392C GLY 4.3 3.2 + - - +
393C ILE* 3.0 1.6 - - - +
394C ASP* 1.3 80.4 - - - +
396C ILE* 1.3 60.6 + - + +
398C ASP* 3.2 1.9 + - - +
399C MET* 3.0 34.5 + - - +
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Residues in contact with ILE 396 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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215C ILE* 3.8 21.5 - - + -
218C VAL* 3.8 27.1 - - + -
219C MET* 4.2 15.0 - - + -
226C VAL* 5.5 5.6 - - + -
234C VAL* 3.9 21.8 - - + -
238C TYR* 2.4 44.7 + - + +
393C ILE* 3.1 22.3 + - + +
395C ALA* 1.3 75.3 - - - +
397C LEU* 1.3 61.9 + - - +
399C MET* 4.1 11.3 + - + +
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Residues in contact with LEU 397 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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233C VAL* 4.2 9.6 - - + +
234C VAL* 4.1 27.6 - - + +
237C VAL* 3.6 36.8 - - + +
238C TYR* 4.8 4.4 - - + -
241C LEU* 4.8 1.9 - - - +
320C TYR* 3.5 30.3 - - + +
390C ILE* 4.6 5.2 - - + +
393C ILE* 3.0 36.7 + - + +
394C ASP* 3.8 3.4 - - - +
396C ILE* 1.3 79.0 - - - +
398C ASP* 1.3 60.4 + - - +
399C MET 3.3 0.2 - - - -
400C GLY* 3.3 2.9 + - - -
401C ARG* 3.0 40.7 + - - +
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Residues in contact with ASP 398 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278C ARG* 3.4 20.4 + - - +
359C PRO* 3.8 0.7 - - - +
360C GLY 2.9 16.1 + - - -
394C ASP 2.9 17.7 + - - +
395C ALA 3.7 3.4 - - - +
397C LEU* 1.3 73.2 - - - +
399C MET* 1.3 56.7 + - - +
400C GLY 2.9 10.8 + - - -
401C ARG* 2.9 24.4 + - - +
402C THR* 3.0 28.7 + - - -
501C ASP* 2.7 53.0 + - - +
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Residues in contact with MET 399 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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22C LEU* 3.8 28.5 - - + -
211C VAL* 6.1 0.7 - - - -
215C ILE* 3.6 29.8 - - + -
238C TYR* 4.8 4.5 - - - +
275C PHE* 2.9 74.7 - - + +
276C VAL 4.0 5.2 - - - +
278C ARG* 3.8 26.7 - - + -
395C ALA* 3.0 18.4 + - - +
396C ILE* 4.4 11.2 - - + +
397C LEU 3.3 0.4 - - - -
398C ASP* 1.3 76.1 - - - +
400C GLY* 1.3 54.8 - - - +
402C THR* 4.7 0.7 - - - -
403C MET 4.9 0.2 - - - -
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Residues in contact with GLY 400 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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238C TYR* 4.1 12.8 - - - -
241C LEU* 3.5 13.9 - - - -
275C PHE* 4.1 10.8 - - - -
396C ILE 4.2 3.2 + - - -
397C LEU 3.3 6.4 + - - -
398C ASP 2.9 0.6 - - - -
399C MET* 1.3 79.3 - - - +
401C ARG* 1.3 65.1 - - - +
402C THR 3.2 1.8 - - - -
403C MET* 3.2 7.6 + - - +
404C VAL* 3.0 25.6 + - - +
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Residues in contact with ARG 401 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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237C VAL* 5.7 0.4 - - + -
241C LEU* 3.6 12.0 - - + +
316C GLY* 3.4 23.9 - - - +
317C THR* 3.7 23.5 + - - +
320C TYR* 3.3 40.9 - - + -
360C GLY* 4.7 0.4 - - - -
362C GLY* 3.4 15.5 - - - +
394C ASP* 3.0 25.3 + - - -
397C LEU* 3.0 22.1 + - - +
398C ASP* 3.1 41.7 + - - +
400C GLY* 1.3 76.3 - - - +
402C THR* 1.3 60.6 + - - +
404C VAL 3.4 0.6 + - - +
405C ASN* 2.9 33.5 + - - +
501C ASP* 2.6 30.1 + - - -
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Residues in contact with THR 402 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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274C ALA* 3.2 31.9 - - + +
278C ARG* 3.4 6.5 - - - -
279C SER 3.2 28.5 - - - +
280C SER* 3.9 4.5 - - - +
398C ASP* 3.0 16.1 + - - -
399C MET 5.2 0.2 - - - -
401C ARG* 1.3 75.4 - - - +
403C MET* 1.3 64.4 + - - +
405C ASN* 3.2 3.2 + - - +
406C VAL* 3.0 23.1 + - + +
501C ASP 2.2 45.8 + - - +
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Residues in contact with MET 403 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241C LEU* 5.9 1.1 - - + -
245C ILE* 4.3 14.6 - - + -
271C MET* 3.3 43.4 - - + +
274C ALA* 3.9 11.2 + - - +
275C PHE* 3.5 45.0 - - + +
400C GLY* 3.2 9.2 + - - +
402C THR* 1.3 78.4 - - - +
404C VAL* 1.3 81.9 + - + +
406C VAL* 3.3 2.3 + - - +
407C THR* 2.9 31.7 + - - -
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Residues in contact with VAL 404 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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241C LEU* 3.5 35.7 - - + -
244C GLN* 4.0 27.4 - - + -
245C ILE* 4.0 17.3 - - + -
249C TYR* 3.8 6.9 + - - +
316C GLY 4.0 12.8 - - - +
400C GLY 3.0 15.9 + - - +
401C ARG 3.8 4.0 - - - +
403C MET* 1.3 90.3 - - + +
405C ASN* 1.3 62.5 + - - +
407C THR* 3.7 6.5 - - - -
408C GLY* 2.9 21.7 + - - -
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Residues in contact with ASN 405 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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280C SER* 5.1 3.8 - - - +
313C ASN* 4.3 5.3 + - - +
314C MET* 3.1 23.4 - - + +
315C ASP* 2.7 15.3 + - - +
316C GLY 2.5 32.8 + - - +
317C THR* 3.1 20.2 + - - -
401C ARG 2.9 14.5 + - - +
402C THR 3.2 9.2 + - - +
404C VAL* 1.3 74.4 - - - +
406C VAL* 1.3 59.6 + - + +
408C GLY* 3.3 2.3 + - - -
409C ASP* 2.9 35.2 + - - +
501C ASP 2.9 26.4 + - - +
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Residues in contact with VAL 406 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270C ALA* 4.4 17.7 - - + +
271C MET* 4.9 2.0 - - + +
274C ALA* 3.5 30.3 - - + -
280C SER* 4.6 17.5 - - - +
283C THR* 3.8 17.7 - - + -
287C THR* 4.2 24.9 - - + +
310C ALA* 5.9 2.0 - - + -
402C THR 3.0 14.4 + - - +
403C MET 3.9 1.8 - - - +
405C ASN* 1.3 72.9 - - - +
407C THR* 1.3 67.1 + - - +
409C ASP* 3.2 10.7 + - + +
410C LEU* 3.0 26.0 + - + +
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Residues in contact with THR 407 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245C ILE* 4.3 14.5 - - + +
249C TYR* 3.9 16.8 - - + -
263C PHE* 3.3 30.5 - - + -
264C ILE* 5.6 1.6 - - + -
271C MET* 3.1 40.4 - - - +
403C MET 2.9 18.5 + - - -
404C VAL* 3.7 7.2 - - - -
406C VAL* 1.3 77.7 - - - +
408C GLY* 1.3 57.8 + - - +
410C LEU* 3.3 4.2 + - - -
411C ALA* 2.9 25.1 + - - +
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Residues in contact with GLY 408 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90C TYR* 3.3 7.7 + - - -
249C TYR* 3.2 33.6 - - - -
313C ASN* 3.6 10.0 + - - -
315C ASP* 4.3 3.4 - - - -
404C VAL 2.9 11.9 + - - -
405C ASN 3.7 3.1 - - - -
407C THR* 1.3 73.6 - - - +
409C ASP* 1.3 59.9 + - - +
411C ALA* 4.3 0.7 - - - -
412C GLY* 2.9 25.5 + - - -
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Residues in contact with ASP 409 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C TYR* 4.8 4.4 + - - -
280C SER* 4.4 2.8 + - - -
287C THR* 5.6 0.7 - - - +
306C LEU* 3.6 18.6 - - + +
309C GLY* 2.8 27.4 - - - +
310C ALA* 3.1 27.2 - - + +
313C ASN* 2.3 34.1 + - - +
405C ASN* 2.9 20.6 + - - +
406C VAL* 3.2 14.7 + - + +
408C GLY* 1.3 76.0 - - - +
410C LEU* 1.3 56.8 + - + +
412C GLY* 3.3 1.2 + - - -
413C THR* 3.0 29.1 + - - +
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Residues in contact with LEU 410 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
263C PHE* 3.7 13.2 - - + -
267C ALA* 3.7 27.4 - - + +
270C ALA* 4.5 8.3 - - + -
271C MET* 5.6 0.7 - - + -
287C THR* 3.2 33.9 - - - +
290C VAL* 3.9 16.4 - - + -
291C ALA* 4.2 9.9 - - + -
295C MET* 4.8 9.0 - - + -
306C LEU* 3.8 21.1 - - + -
406C VAL* 3.0 20.3 + - + +
407C THR* 3.7 5.6 - - - +
409C ASP* 1.3 73.1 - - - +
411C ALA* 1.3 66.6 + - - +
413C THR* 3.1 7.0 - - + +
414C VAL* 2.9 27.5 + - - +
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Residues in contact with ALA 411 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C TYR* 3.7 10.1 - - - +
249C TYR* 4.3 11.2 - - + -
253C LEU* 3.8 20.2 - - + -
263C PHE* 3.4 21.9 - - + -
407C THR 2.9 17.6 + - - +
408C GLY* 3.7 6.5 - - - +
410C LEU* 1.3 77.1 - - - +
412C GLY* 1.3 55.8 + - - +
414C VAL* 3.4 1.9 + - - +
415C ILE* 2.9 34.9 + - - +
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Residues in contact with GLY 412 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C ILE* 4.1 7.6 - - - -
90C TYR* 3.4 34.7 + - - -
91C TYR* 5.0 0.7 - - - -
408C GLY 2.9 12.6 + - - -
409C ASP 3.8 1.6 - - - -
410C LEU 3.3 0.2 - - - -
411C ALA* 1.3 77.7 - - - +
413C THR* 1.3 56.2 + - - +
415C ILE* 3.3 1.9 + - - +
416C VAL* 2.9 34.3 + - - +
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Residues in contact with THR 413 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C ILE* 4.5 1.6 - - - +
91C TYR* 5.3 0.6 + - - -
291C ALA* 5.1 4.7 - - + -
297C VAL* 4.9 5.6 - - + +
301C ILE* 3.2 18.9 + - - +
302C PHE* 4.2 3.1 - - - +
305C THR* 2.7 31.8 + - - -
306C LEU* 3.6 26.0 - - + +
409C ASP 3.0 16.5 + - - +
410C LEU* 3.1 22.7 - - + +
412C GLY* 1.3 75.5 - - - +
414C VAL* 1.3 61.3 + - + +
416C VAL* 3.4 2.6 + - - -
417C ALA* 2.9 29.7 + - - +
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Residues in contact with VAL 414 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253C LEU* 5.3 1.1 - - + -
258C ILE* 3.5 39.9 - - + -
263C PHE* 4.8 2.9 - - + -
295C MET* 3.6 38.8 - - + -
297C VAL* 4.9 8.5 - - + -
410C LEU* 2.9 22.6 + - - +
411C ALA* 3.7 5.4 - - - +
413C THR* 1.3 83.4 - - + +
415C ILE* 1.3 57.9 + - + +
417C ALA* 3.3 6.8 + - - +
418C LYS* 2.9 25.7 + - + +
423C LEU* 3.8 7.4 - - + +
428C TRP* 4.8 7.2 - - + -
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Residues in contact with ILE 415 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C TYR* 5.2 13.0 - - + -
252C LEU* 4.2 7.2 - - + +
253C LEU* 3.6 33.9 - - + +
256C PHE* 3.6 56.3 - - + -
258C ILE* 4.0 12.3 - - + -
411C ALA 2.9 23.4 + - - +
412C GLY* 3.8 5.2 - - - +
414C VAL* 1.3 74.9 - - - +
416C VAL* 1.3 69.1 + - + +
418C LYS* 2.9 14.6 + - + +
419C THR* 2.9 14.3 + - - +
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Residues in contact with VAL 416 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C VAL* 3.9 37.0 - - + +
86C LYS* 3.5 39.1 + - + +
87C ILE* 3.5 23.1 - - + -
90C TYR* 5.3 2.7 - - + -
301C ILE* 4.6 7.0 - - + -
305C THR* 4.8 1.1 - - + -
412C GLY 2.9 21.2 + - - +
413C THR* 4.0 5.2 - - - +
415C ILE* 1.3 78.2 - - + +
417C ALA* 1.3 60.4 + - - +
419C THR* 3.5 5.0 + - - +
420C GLU* 3.2 20.8 + - - +
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Residues in contact with ALA 417 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297C VAL* 3.6 23.3 - - + -
301C ILE* 4.3 11.6 - - + +
413C THR 2.9 18.7 + - - +
414C VAL 3.6 1.3 - - - +
416C VAL* 1.3 77.9 - - - +
418C LYS* 1.3 57.0 + - - +
420C GLU* 3.0 6.9 + - - +
421C LYS 2.8 25.5 + - - -
422C GLU* 3.1 19.3 + - + -
423C LEU* 3.4 16.8 - - + -
----------------------------------------------------------
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Residues in contact with LYS 418 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
256C PHE* 3.2 37.9 + - + +
257C GLY* 3.3 7.0 - - - -
258C ILE* 3.3 25.2 - - + +
414C VAL* 2.9 18.1 + - + +
415C ILE* 2.9 13.2 + - + +
417C ALA* 1.3 75.8 - - - +
419C THR* 1.3 59.5 + - - +
421C LYS* 3.9 18.8 + - + +
423C LEU* 3.3 28.7 - - + +
425C GLU* 4.8 11.4 + - - +
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Residues in contact with THR 419 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C LYS* 3.3 38.5 + - + +
256C PHE* 3.5 24.8 - - - -
415C ILE* 2.9 14.4 + - - +
416C VAL* 3.9 2.5 - - - -
417C ALA 3.2 0.2 - - - -
418C LYS* 1.3 77.8 - - - +
420C GLU* 1.3 58.1 + - - +
421C LYS* 2.9 24.0 + - - +
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Residues in contact with GLU 420 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79C ARG* 3.0 43.2 + - - -
82C ARG* 4.3 17.9 - - - +
83C VAL* 3.3 24.5 - - + +
86C LYS* 4.1 5.6 - - - +
300C GLY 5.6 0.2 - - - -
301C ILE* 3.5 18.8 - - - +
416C VAL 3.2 14.0 + - - +
417C ALA* 3.0 7.1 + - - +
419C THR* 1.3 73.9 - - - +
421C LYS* 1.3 74.0 + - - +
422C GLU* 3.2 19.4 + - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il