Contacts of the helix formed by residues 756 - 783 (chain B) in PDB entry 6ZGI
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with TYR 756 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
968A SER* 6.1 0.2 - - - -
970A PHE* 3.5 44.5 + + - -
971A GLY 3.7 2.5 + - - -
752B LEU 4.2 8.5 - - - -
753B LEU* 2.8 32.1 + - + +
755B GLN* 1.3 93.9 - - + +
757B GLY* 1.3 63.0 + - - +
758B SER 3.3 3.7 + - - -
759B PHE* 3.3 33.1 + + + +
760B CYS* 3.7 12.9 + - - -
994B ASP* 3.2 23.8 + - - -
997B ILE* 4.0 17.9 - - + -
998B THR* 4.4 9.0 + - + -
1001B LEU* 3.5 31.9 - - + -
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Residues in contact with GLY 757 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
753B LEU 4.1 2.1 + - - -
754B LEU* 4.0 9.6 + - - -
755B GLN 3.7 1.8 - - - -
756B TYR* 1.3 77.8 - - - +
758B SER* 1.3 62.9 + - - +
760B CYS* 3.3 9.0 + - - +
761B THR* 3.0 26.6 + - - -
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Residues in contact with SER 758 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
961A THR* 4.4 6.9 - - - +
964A LYS* 6.0 2.0 - - - +
965A GLN* 3.1 35.4 + - - +
968A SER* 5.8 2.2 - - - -
756B TYR 3.3 1.0 - - - -
757B GLY* 1.3 75.8 - - - +
759B PHE* 1.3 62.2 + - - +
761B THR* 3.3 8.1 + - - -
762B GLN* 2.9 27.7 + - - +
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Residues in contact with PHE 759 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
965A GLN* 3.9 29.6 - - + -
968A SER* 4.1 13.5 - - - -
970A PHE* 3.8 35.0 - + - -
999A GLY 5.7 0.2 - - - -
1002A GLN* 6.1 7.4 - - + -
1003A SER* 4.0 19.7 - - - -
1006A THR* 6.2 1.8 - - + -
756B TYR* 3.6 35.4 - + + +
757B GLY 3.2 0.2 - - - -
758B SER* 1.3 80.0 - - - +
760B CYS* 1.3 57.2 + - - +
762B GLN* 3.3 12.4 + - - +
763B LEU* 3.0 36.4 + - + +
1001B LEU* 4.6 16.6 - - + -
1005B GLN* 5.6 10.3 + - - +
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Residues in contact with CYS 760 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
738B CYS* 2.0 54.0 - - + +
739B THR* 5.9 0.4 - - - -
742B ILE* 4.9 2.7 - - - -
753B LEU* 5.3 10.1 - - - -
756B TYR 3.7 11.1 + - - -
757B GLY* 3.3 10.0 + - - +
759B PHE* 1.3 76.6 - - - +
761B THR* 1.3 65.4 + - - +
763B LEU* 3.4 6.5 + - - +
764B ASN* 3.0 30.9 + - - +
1001B LEU* 4.3 10.5 - - - -
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Residues in contact with THR 761 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302A THR* 4.4 29.6 + - + +
757B GLY 3.0 14.7 + - - -
758B SER* 3.6 10.1 - - - +
759B PHE 3.3 0.2 - - - -
760B CYS* 1.3 76.6 - - - +
762B GLN* 1.3 56.7 + - - +
764B ASN* 3.4 7.8 + - - +
765B ARG* 3.0 51.4 + - + +
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Residues in contact with GLN 762 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
961A THR* 4.7 10.9 - - + +
965A GLN* 3.3 25.3 + - - +
1006A THR* 3.9 22.7 - - - +
1007A TYR* 5.6 2.0 - - - +
1010A GLN* 3.5 30.7 + - - +
758B SER* 2.9 15.7 + - - +
759B PHE* 3.6 13.6 - - - +
760B CYS 3.3 0.2 - - - -
761B THR* 1.3 74.7 - - - +
763B LEU* 1.3 65.7 + - + +
765B ARG* 3.2 27.6 + - - +
766B ALA* 3.1 21.8 + - - +
1005B GLN* 5.4 3.4 + - - -
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Residues in contact with LEU 763 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
736B VAL* 6.2 1.1 - - + -
738B CYS* 4.5 4.3 - - - -
759B PHE* 3.0 22.7 + - + +
760B CYS* 3.7 12.1 - - - +
762B GLN* 1.3 76.4 - - + +
764B ASN* 1.3 66.3 + - - +
766B ALA* 3.2 7.9 + - - +
767B LEU* 3.1 27.9 + - + +
1001B LEU* 5.1 7.4 - - + +
1004B LEU* 3.8 35.2 - - + +
1005B GLN* 3.8 35.7 - - + +
1008B VAL* 3.7 31.7 - - + +
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Residues in contact with ASN 764 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
735B SER* 4.6 4.7 + - - -
736B VAL* 3.2 35.9 + - - +
738B CYS* 5.3 5.5 - - - +
760B CYS* 3.0 24.5 + - - +
761B THR* 3.8 6.3 - - - +
763B LEU* 1.3 76.0 - - - +
765B ARG* 1.3 67.0 + - - +
767B LEU* 3.3 8.4 + - - +
768B THR* 3.0 33.6 + - + +
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Residues in contact with ARG 765 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
957A GLN* 4.0 33.9 + - - +
961A THR* 3.7 24.0 + - - +
758B SER 5.8 0.2 + - - -
761B THR* 3.0 39.5 + - + +
762B GLN* 3.2 32.7 + - - +
764B ASN* 1.3 76.2 - - - +
766B ALA* 1.3 62.1 + - - +
768B THR* 2.9 20.8 + - - -
769B GLY* 3.0 9.2 + - - -
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Residues in contact with ALA 766 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010A GLN* 4.7 10.1 - - - +
762B GLN 3.1 12.0 + - - +
763B LEU* 3.2 7.8 + - - +
765B ARG* 1.3 76.8 - - - +
767B LEU* 1.3 62.9 + - - +
769B GLY* 3.3 3.4 + - - -
770B ILE* 3.1 27.8 + - - +
1008B VAL* 3.8 21.1 - - + -
1012B LEU* 4.4 18.9 - - + +
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Residues in contact with LEU 767 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
734B THR* 4.0 37.4 - - - +
735B SER* 4.3 1.8 - - - -
736B VAL* 4.0 35.7 - - + +
763B LEU* 3.1 20.7 + - + +
764B ASN* 3.3 10.3 + - - +
765B ARG 3.3 0.2 - - - -
766B ALA* 1.3 76.5 - - - +
768B THR* 1.3 58.7 + - + +
770B ILE* 3.2 22.7 + - + +
771B ALA* 3.0 27.5 + - - +
1007B TYR* 4.6 10.8 - - + -
1008B VAL* 4.4 24.5 - - + -
1011B GLN* 4.7 6.3 - - + +
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Residues in contact with THR 768 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A GLN* 5.3 12.3 - - + -
735B SER* 5.9 2.7 - - - +
764B ASN* 3.0 17.8 + - + +
765B ARG* 2.9 17.3 + - - -
767B LEU* 1.3 74.6 - - + +
769B GLY* 1.3 65.4 + - - +
771B ALA* 3.2 6.7 + - - +
772B VAL* 3.0 32.3 + - - +
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Residues in contact with GLY 769 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
765B ARG 3.0 13.8 + - - -
766B ALA 3.3 3.6 + - - -
768B THR* 1.3 77.9 + - - +
770B ILE* 1.3 62.4 + - - +
772B VAL* 3.3 11.9 - - - +
773B GLU* 3.1 24.0 + - - +
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Residues in contact with ILE 770 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731B MET* 4.8 10.8 - - + -
732B THR 5.7 2.9 - - - +
733B LYS* 6.4 0.9 - - - -
766B ALA* 3.1 17.7 + - + +
767B LEU* 3.2 19.3 + - + +
769B GLY* 1.3 74.2 - - - +
771B ALA* 1.3 64.5 + - - +
773B GLU* 3.1 8.2 + - - +
774B GLN* 3.1 33.1 + - + +
1008B VAL 4.9 0.7 - - - +
1011B GLN* 4.0 32.5 - - + +
1012B LEU* 3.9 28.5 - - + +
1015B ALA* 3.7 24.5 - - + -
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Residues in contact with ALA 771 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
733B LYS* 3.3 49.2 - - + +
734B THR 5.3 3.8 - - - +
767B LEU 3.0 14.9 + - - +
768B THR* 3.2 9.6 + - - +
770B ILE* 1.3 79.3 - - - +
772B VAL* 1.3 63.3 + - + +
774B GLN* 3.4 8.2 + - - +
775B ASP* 3.6 7.3 - - - +
861B LEU* 4.9 11.4 - - + -
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Residues in contact with VAL 772 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768B THR* 3.0 16.5 + - - +
769B GLY* 3.3 16.8 - - - +
771B ALA* 1.3 75.8 - - + +
773B GLU* 1.3 73.0 + - + +
774B GLN 3.3 0.2 + - - -
775B ASP* 3.3 10.5 + - - +
776B LYS* 3.1 20.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 773 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017A GLU* 5.5 2.5 - - - +
769B GLY 3.1 14.1 + - - +
770B ILE* 3.4 11.2 - - - +
772B VAL* 1.3 81.9 - - - +
774B GLN* 1.3 67.5 + - - +
776B LYS* 3.2 23.6 + - - +
777B ASN* 2.9 41.0 + - - +
1015B ALA* 6.0 2.5 - - + +
1019B ARG* 3.4 39.7 - - + +
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Residues in contact with GLN 774 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
730B SER* 3.4 16.5 - - - -
731B MET* 3.1 59.0 + - + +
732B THR 5.3 0.9 - - - +
733B LYS* 4.3 14.6 - - + -
770B ILE* 3.1 32.3 + - + +
771B ALA 3.7 7.9 - - - +
772B VAL 3.2 0.6 - - - -
773B GLU* 1.3 83.7 - - - +
775B ASP* 1.3 63.4 + - - +
777B ASN* 3.2 18.8 + - - +
778B THR* 3.1 24.1 + - - -
1015B ALA* 4.4 9.9 + - - +
1018B ILE* 4.1 3.4 - - - +
----------------------------------------------------------
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Residues in contact with ASP 775 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
733B LYS* 3.3 24.9 + - - +
771B ALA 3.6 9.7 + - - +
772B VAL* 3.3 10.0 + - - +
774B GLN* 1.3 73.7 - - - +
776B LYS* 1.3 65.1 + - - +
778B THR* 3.3 7.0 + - - +
779B GLN* 3.0 26.1 + - - +
863B PRO* 4.2 5.7 - - - +
864B LEU* 3.4 48.9 + - + +
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Residues in contact with LYS 776 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
947A LYS* 3.4 27.7 - - - +
772B VAL 3.1 13.1 + - - +
773B GLU* 3.2 28.8 + - - +
775B ASP* 1.3 76.6 - - - +
777B ASN* 1.3 62.7 + - - +
779B GLN* 3.4 12.7 + - + +
780B GLU* 2.9 49.3 + - + +
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Residues in contact with ASN 777 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
729B VAL* 3.5 25.3 + - - +
773B GLU* 2.9 30.7 + - - +
774B GLN* 3.2 26.9 + - - +
776B LYS* 1.3 76.1 - - - +
778B THR* 1.3 62.1 + - - +
780B GLU* 3.2 14.8 + - - +
781B VAL* 3.1 27.4 + - - +
1015B ALA 5.5 0.2 + - - -
1018B ILE* 4.6 1.2 - - - +
1019B ARG* 4.0 32.1 - - - +
1022B ALA* 3.9 15.6 - - + +
1023B ASN* 5.7 1.0 + - - -
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Residues in contact with THR 778 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
729B VAL* 4.0 11.7 - - - +
730B SER* 3.9 18.0 + - - -
774B GLN 3.1 11.0 + - - -
775B ASP* 3.9 8.1 - - - -
777B ASN* 1.3 77.4 - - - +
779B GLN* 1.3 64.1 + - - +
781B VAL 3.3 0.9 + - - -
782B PHE* 3.0 41.7 + - + +
865B LEU* 4.0 25.5 - - + +
870B ILE* 4.3 12.8 - - + -
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Residues in contact with GLN 779 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
775B ASP 3.0 17.9 + - - +
776B LYS* 3.6 11.8 - - + +
778B THR* 1.3 77.4 - - - +
780B GLU* 1.3 63.5 + - + +
783B ALA* 3.0 44.8 + - + +
786B LYS* 5.0 10.3 - - - +
865B LEU* 5.2 7.3 - - + +
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Residues in contact with GLU 780 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
776B LYS* 2.9 49.7 + - + +
777B ASN* 3.2 16.3 + - - +
779B GLN* 1.3 78.2 - - + +
781B VAL* 1.3 63.6 + - + +
784B GLN* 3.9 18.5 + - - +
1022B ALA* 6.0 1.6 - - - +
1023B ASN* 4.2 17.7 + - - -
1026B ALA* 4.0 13.8 - - + +
----------------------------------------------------------
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Residues in contact with VAL 781 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
729B VAL* 4.0 23.6 - - + -
777B ASN 3.1 15.8 + - - +
778B THR 4.0 2.2 - - - +
780B GLU* 1.3 80.8 - - + +
782B PHE* 1.3 83.9 + - + +
783B ALA 3.7 0.2 - - - -
784B GLN* 3.7 13.3 + - - +
877B LEU* 5.6 0.2 - - - +
1022B ALA* 3.7 25.8 - - + +
1025B ALA* 4.2 17.3 - - + +
1026B ALA* 4.2 9.4 - - + +
1029B MET* 3.9 27.3 - - + +
1060B VAL* 4.9 4.5 - - + -
----------------------------------------------------------
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Residues in contact with PHE 782 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
729B VAL* 4.8 10.8 - - + -
778B THR* 3.0 34.6 + - + +
781B VAL* 1.3 91.0 - - + +
783B ALA* 1.3 56.9 + - + +
784B GLN* 3.4 8.6 + - - +
785B VAL* 5.1 1.9 + - - +
865B LEU* 5.7 1.3 - - + -
870B ILE* 3.9 32.5 - - + -
873B TYR* 3.6 34.4 - - + +
874B THR* 3.9 22.4 - - + -
877B LEU* 4.5 12.2 - - + +
1029B MET* 4.5 9.6 - - + -
1055B SER* 4.4 3.8 - - - -
1059B GLY* 3.9 22.9 - - - -
1060B VAL* 4.0 25.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 783 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779B GLN* 3.0 35.6 + - + +
781B VAL 3.7 0.2 - - - -
782B PHE* 1.3 76.6 - - + +
784B GLN* 1.3 63.6 + - - +
785B VAL 3.5 3.8 - - - -
786B LYS* 3.8 24.0 - - - +
865B LEU* 5.8 2.2 - - + -
873B TYR* 3.9 32.5 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il