Contacts of the strand formed by residues 135 - 148 (chain A) in PDB entry 7BTN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 135 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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4A PHE* 3.6 48.0 - - + +
21A LEU* 3.8 10.5 - - + -
35A ILE* 3.6 27.1 - - + -
45A HIS* 3.6 30.5 - - + -
46A MET 3.4 7.0 - - - +
47A VAL* 3.9 19.7 - - + -
133A GLY 3.6 13.0 - - - +
134A GLU* 1.3 82.5 - - - +
136A ILE* 1.3 64.8 + - - +
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Residues in contact with ILE 136 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A HIS* 3.5 12.6 - - - -
46A MET* 2.9 55.3 + - + +
48A VAL* 4.0 8.5 - - + -
124A GLU* 4.0 12.1 - - + +
128A LYS* 4.8 1.3 - - - +
130A CYS* 4.0 27.8 - - - -
134A GLU* 4.0 22.2 - - + +
135A ILE* 1.3 78.6 - - - +
137A GLY* 1.3 61.3 + - - +
138A VAL* 3.6 21.1 - - + -
160A ASN* 4.1 19.7 - - - +
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Residues in contact with GLY 137 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A ALA* 4.7 7.2 - - - -
43A VAL* 3.9 12.8 - - - -
44A PHE 3.3 7.9 - - - -
136A ILE* 1.3 75.4 - - - +
138A VAL* 1.3 55.7 + - - +
160A ASN* 3.4 10.3 + - - +
161A VAL* 2.7 40.8 + - - +
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Residues in contact with VAL 138 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A ASP 4.4 0.2 - - - +
43A VAL* 3.6 7.1 - - - +
44A PHE* 2.8 52.0 + - + +
45A HIS 4.7 0.9 - - - +
46A MET* 3.9 20.6 - - + -
97A ILE* 5.6 3.1 - - + -
122A VAL* 5.0 3.8 - - + -
124A GLU* 3.9 16.2 - - + -
136A ILE* 3.6 26.0 - - + -
137A GLY* 1.3 79.3 - - - +
139A LYS* 1.3 63.8 + - - +
140A VAL* 3.9 4.4 + - + -
158A ALA* 3.8 21.8 - - + -
159A ILE 3.1 8.5 - - - +
161A VAL 3.9 0.2 - - - +
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Residues in contact with LYS 139 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A ASP 4.6 11.7 - - - +
43A VAL* 5.2 2.0 - - + -
138A VAL* 1.3 72.2 - - - +
140A VAL* 1.3 66.1 + - - +
141A LEU* 3.4 7.4 + - + +
158A ALA* 3.3 3.1 - - - -
159A ILE* 2.8 39.6 + - + +
161A VAL* 3.8 30.1 - - + -
166A ALA* 3.0 30.4 + - + +
167A ALA* 4.4 4.0 - - - +
169A TYR 2.8 26.1 + - - +
170A ASN* 2.9 24.7 + - - +
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Residues in contact with VAL 140 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A ASP 5.1 1.6 + - - -
44A PHE* 3.5 40.1 - - + -
97A ILE* 4.8 2.2 - - + -
138A VAL* 3.9 2.4 + - + -
139A LYS* 1.3 74.1 - - - +
141A LEU* 1.3 65.2 + - - +
142A GLY 3.9 1.6 - - - +
156A VAL* 3.9 19.3 - - + -
157A ILE 3.9 2.7 - - - -
158A ALA* 4.2 4.9 - - + -
213A LYS* 3.2 25.8 - - + +
216A ALA* 3.7 30.3 - - + -
217A ILE* 4.3 12.6 - - + -
220A ILE* 3.8 18.4 - - + -
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Residues in contact with LEU 141 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A ILE* 3.9 16.2 - - + -
139A LYS* 3.7 15.0 - - + +
140A VAL* 1.3 78.2 - - - +
142A GLY* 1.3 59.1 + - - +
157A ILE 2.8 12.2 + - - +
158A ALA* 4.4 2.7 - - - +
159A ILE* 4.1 14.1 - - + +
169A TYR* 3.4 45.5 - - + +
170A ASN* 3.7 12.3 - - - +
171A ASP* 3.2 36.2 - - - +
172A ILE* 3.2 10.8 + - + +
175A VAL* 3.6 28.3 - - + -
213A LYS* 3.5 8.5 + - - +
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Residues in contact with GLY 142 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140A VAL* 3.8 2.0 - - - +
141A LEU* 1.3 80.0 - - - +
143A ILE* 1.3 65.2 + - - +
156A VAL* 3.6 4.0 - - - +
157A ILE* 2.8 29.7 + - - +
172A ILE* 4.4 7.4 - - - -
211A LYS 3.3 12.8 - - - -
212A ASP 3.9 3.1 - - - -
216A ALA* 3.4 16.9 - - - +
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Residues in contact with ILE 143 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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120A ILE* 4.3 0.7 - - + -
142A GLY* 1.3 75.8 - - - +
144A LEU* 1.3 63.5 + - - +
145A ALA 3.7 0.7 + - - -
154A TRP* 3.7 38.8 - - + -
155A LYS 3.5 17.5 - - - +
156A VAL* 3.9 18.8 - - + +
157A ILE* 4.2 2.3 - - - +
172A ILE* 5.0 1.0 - - - +
210A PHE* 3.4 5.7 - - - -
211A LYS* 2.8 41.9 + - + +
215A PHE* 3.8 23.3 - - + -
216A ALA* 3.6 22.7 - - + +
219A ILE* 4.0 21.1 - - + -
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Residues in contact with LEU 144 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143A ILE* 1.3 73.3 - - - +
145A ALA* 1.3 69.5 + - - +
146A MET* 3.7 30.3 - - + -
153A ASP 3.6 1.9 - - - +
154A TRP* 3.5 5.5 - - - -
155A LYS* 2.8 42.2 + - + +
157A ILE* 4.2 3.4 - - + +
186A THR* 3.9 17.3 - - + -
187A VAL* 4.2 5.2 - - + -
190A PHE* 3.8 20.2 - - + -
208A ALA* 4.0 20.2 - - + -
209A GLU 3.7 12.1 - - - +
210A PHE* 3.6 30.3 - - + -
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Residues in contact with ALA 145 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143A ILE 3.7 2.0 + - - -
144A LEU* 1.3 71.6 - - - +
146A MET* 1.3 60.6 + - - +
147A ILE* 6.0 1.6 - - + -
152A THR* 5.6 3.1 - - + -
153A ASP 3.9 2.7 - - - -
154A TRP* 3.4 31.6 - - + -
207A ASN 3.8 0.3 - - - +
208A ALA* 3.4 3.6 - - - -
209A GLU* 2.9 49.2 + - + +
211A LYS* 4.9 5.8 - - + -
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Residues in contact with MET 146 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144A LEU* 3.7 18.8 - - + -
145A ALA* 1.3 75.8 - - - +
147A ILE* 1.3 64.4 + - - +
148A ASP 3.8 0.3 + - - -
151A GLU 3.3 3.3 - - - +
152A THR* 3.5 3.9 - - - +
153A ASP* 2.9 45.9 + - + +
155A LYS* 3.5 39.3 - - + -
187A VAL* 5.8 0.2 - - - -
190A PHE* 3.4 34.5 - - + -
194A LYS* 3.9 12.6 - - - +
206A PHE* 3.6 25.4 - - + -
207A ASN 3.1 11.7 - - - +
208A ALA* 4.0 6.7 - - + -
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Residues in contact with ILE 147 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145A ALA* 6.0 1.1 - - + -
146A MET* 1.3 74.5 - - - +
148A ASP* 1.3 59.5 + - - +
150A GLY* 3.6 25.1 - - - +
151A GLU 3.3 3.4 - - - +
152A THR* 3.9 22.4 - - + +
203A GLU 3.8 14.4 - - - +
204A PHE* 3.5 23.6 - - + +
206A PHE* 3.0 12.8 - - - -
207A ASN* 2.9 44.0 + - + +
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Residues in contact with ASP 148 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146A MET 3.8 2.1 + - - +
147A ILE* 1.3 71.5 - - - +
149A GLU* 1.3 80.9 + - - +
151A GLU* 2.9 40.4 + - + +
153A ASP* 5.2 4.9 - - + -
194A LYS* 3.6 51.1 - - + +
195A VAL* 5.5 1.9 - - - +
205A ALA 3.6 6.8 - - - +
206A PHE* 4.9 0.7 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il