Contacts of the strand formed by residues 151 - 160 (chain A) in PDB entry 7BTN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 151 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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115A GLY 5.5 6.5 - - - +
146A MET 3.3 0.9 - - - +
147A ILE* 3.3 7.0 - - - -
148A ASP* 2.9 49.0 + - + +
149A GLU* 4.4 8.0 - - - +
150A GLY* 1.3 78.0 - - - +
152A THR* 1.3 64.6 + - - +
153A ASP* 3.9 0.6 + - + -
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Residues in contact with THR 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A GLU* 4.8 5.4 - - - +
115A GLY* 4.3 20.9 + - - +
116A ASP* 5.4 1.2 + - - +
145A ALA* 5.6 1.6 - - + -
146A MET 3.5 7.9 - - - +
147A ILE* 3.9 15.2 - - + +
150A GLY 4.0 1.2 + - - -
151A GLU* 1.3 74.2 - - - +
153A ASP* 1.3 63.5 + - - +
154A TRP* 3.3 48.2 + - + +
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Residues in contact with ASP 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A GLU* 4.7 2.3 - - - +
116A ASP* 4.6 11.3 - - - +
121A ASP* 3.7 4.0 - - - +
144A LEU 3.6 2.4 - - - +
145A ALA* 3.9 0.7 - - - -
146A MET* 2.9 43.7 + - + +
148A ASP* 5.2 4.0 - - + -
151A GLU 5.2 1.6 - - - +
152A THR* 1.3 75.3 - - - +
154A TRP* 1.3 69.2 + - - +
155A LYS* 3.3 29.7 + - - -
194A LYS* 3.0 32.2 + - - +
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Residues in contact with TRP 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102A GLU* 3.5 28.9 + - + +
120A ILE* 4.3 9.4 - - + -
121A ASP* 3.7 12.4 + - - +
143A ILE* 3.7 30.3 - - + -
144A LEU 3.5 2.5 - - - -
145A ALA* 3.4 32.8 - - + -
152A THR* 3.3 30.1 - - + +
153A ASP* 1.3 80.4 + - - +
155A LYS* 1.3 72.3 + - - +
156A VAL 4.1 0.7 - - - -
215A PHE* 3.8 33.9 - + - -
219A ILE* 4.0 30.6 - - + +
223A THR* 5.9 1.6 - - + -
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Residues in contact with LYS 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A TYR* 2.9 15.3 + - + +
121A ASP* 2.6 36.7 + - + +
123A CYS* 4.1 16.8 - - - -
143A ILE* 3.8 3.4 - - - -
144A LEU* 2.8 45.1 + - + +
146A MET* 3.5 21.5 - - + -
153A ASP* 3.3 29.2 + - - -
154A TRP* 1.3 77.0 - - - +
156A VAL* 1.3 64.7 + - - +
157A ILE* 3.5 2.6 + - + +
190A PHE* 3.6 37.1 - - + -
194A LYS* 4.8 0.6 - - - +
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Residues in contact with VAL 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97A ILE* 4.5 7.0 - - + -
120A ILE* 3.8 26.7 - - + -
121A ASP 2.9 20.3 + - - +
122A VAL* 4.2 16.2 - - + -
123A CYS* 2.8 30.1 + - - +
140A VAL* 3.9 30.7 - - + -
142A GLY 3.6 11.4 - - - +
143A ILE* 3.9 9.2 - - + -
154A TRP 4.1 0.2 - - - -
155A LYS* 1.3 73.7 - - - +
157A ILE* 1.3 66.2 + - - +
158A ALA* 4.1 0.9 - - + -
220A ILE* 3.9 16.8 - - + -
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Residues in contact with ILE 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92A TRP* 6.1 0.4 - - + -
123A CYS* 3.6 16.4 - - + +
125A ILE* 4.1 21.1 - - + -
140A VAL* 3.8 1.4 - - - -
141A LEU* 2.8 31.9 + - + -
142A GLY 2.8 22.7 + - - +
144A LEU* 4.2 6.7 - - + +
155A LYS* 3.8 12.3 - - + +
156A VAL* 1.3 78.0 - - - +
158A ALA* 1.3 57.6 + - - +
172A ILE* 4.0 22.9 - - + -
175A VAL* 4.6 11.4 - - + -
183A LEU* 4.6 6.7 - - + -
186A THR* 4.7 10.8 - - + +
210A PHE* 3.9 28.7 - - + -
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Residues in contact with ALA 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122A VAL* 3.8 22.0 - - + -
123A CYS 3.0 7.1 + - - +
124A GLU* 3.2 5.3 - - - -
125A ILE* 3.0 30.8 + - - +
138A VAL* 3.8 22.9 - - + -
139A LYS 3.3 15.9 - - - +
140A VAL* 4.2 4.0 - - + -
141A LEU* 4.2 4.3 - - - +
156A VAL* 4.5 3.8 - - + -
157A ILE* 1.3 75.6 - - - +
159A ILE* 1.3 59.9 + - - +
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Residues in contact with ILE 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124A GLU* 3.5 4.0 - - - -
125A ILE* 4.0 12.1 - - + -
126A GLY* 3.9 20.9 - - - +
138A VAL* 3.1 5.4 - - - -
139A LYS* 2.8 48.2 + - + +
141A LEU* 4.1 15.5 - - + -
158A ALA* 1.3 76.4 - - - +
160A ASN* 1.3 74.5 + - - +
161A VAL* 4.0 0.2 - - - -
163A ASP* 4.0 20.9 - - + +
166A ALA* 4.5 4.3 - - - -
169A TYR* 3.6 43.7 - - + -
179A LYS* 4.7 3.4 - - - +
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Residues in contact with ASN 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124A GLU* 2.7 24.0 + - - +
126A GLY* 5.1 0.7 - - - -
128A LYS* 4.2 26.8 - - + +
130A CYS* 4.3 4.6 - - - -
136A ILE* 4.1 28.8 - - + +
137A GLY 3.4 12.8 + - - +
138A VAL* 4.2 4.0 - - - -
159A ILE* 1.3 71.5 - - - +
161A VAL* 1.3 60.7 + - - +
162A ASP* 2.9 31.4 + - - +
163A ASP* 3.0 35.1 + - + +
166A ALA* 3.6 6.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il