Contacts of the helix formed by residues 985 - 1033 (chain B) in PDB entry 7CN9
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 985 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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984B LEU* 1.3 91.6 - - - +
986B PRO* 1.3 80.8 - - + +
987B PRO* 3.3 16.0 - - + +
988B GLU* 4.6 8.0 + - - +
989B ALA* 3.3 12.9 + - - +
413C GLY 4.8 4.0 - - - +
415C THR* 4.8 10.6 - - - -
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Residues in contact with PRO 986 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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984B LEU 4.7 0.4 - - - +
985B ASP* 1.3 89.3 - - + +
987B PRO* 1.3 72.8 - - + +
989B ALA* 3.3 4.9 + - + +
990B GLU* 2.9 33.4 + - + +
427C ASP* 6.5 0.7 - - + -
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Residues in contact with PRO 987 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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985B ASP* 3.3 18.8 - - + +
986B PRO* 1.3 97.1 - - + -
988B GLU* 1.3 58.0 - - - +
990B GLU* 2.8 32.1 + - + +
991B VAL* 3.8 5.0 + - - +
413C GLY* 3.1 42.0 - - - +
427C ASP* 5.1 8.1 - - + -
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Residues in contact with GLU 988 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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983B ARG* 4.1 7.3 + - - -
984B LEU* 3.1 36.2 - - + +
985B ASP* 4.1 6.4 + - - +
986B PRO 3.6 0.2 - - - -
987B PRO* 1.3 80.3 - - - +
989B ALA* 1.3 62.9 + - - +
990B GLU 3.0 0.9 + - - -
991B VAL* 3.2 8.7 + - + +
992B GLN* 3.0 31.4 + - - +
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Residues in contact with ALA 989 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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980B ILE* 4.6 2.7 - - + +
981B LEU* 4.5 14.4 - - + -
984B LEU* 3.6 20.9 - - + +
985B ASP 3.3 21.0 + - - +
986B PRO* 3.4 4.9 - - + +
987B PRO 3.2 0.2 - - - -
988B GLU* 1.3 78.2 - - - +
990B GLU* 1.3 57.0 + - - +
992B GLN* 3.8 9.2 - - + -
993B ILE* 2.7 47.7 + - + +
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Residues in contact with GLU 990 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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748B GLU* 4.8 9.9 - - - +
752B LEU* 3.9 26.9 - - - +
986B PRO* 2.9 26.1 + - + +
987B PRO* 2.8 18.9 + - + +
989B ALA* 1.3 77.3 - - - +
991B VAL* 1.3 58.8 + - + +
993B ILE* 3.2 16.3 + - - +
994B ASP* 2.9 25.9 + - - +
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Residues in contact with VAL 991 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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995A ARG* 3.3 32.8 - - - +
987B PRO 4.6 7.4 - - - +
988B GLU* 3.2 7.0 + - + +
990B GLU* 1.3 79.3 - - + +
992B GLN* 1.3 58.2 + - - +
994B ASP* 3.0 11.7 + - + +
995B ARG* 2.9 31.5 + - + +
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Residues in contact with GLN 992 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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971B GLY 3.6 8.5 + - - -
972B ALA* 3.4 29.5 - - - +
973B ILE 4.5 0.2 - - - +
980B ILE* 3.3 28.5 - - + -
983B ARG* 6.1 0.7 - - - +
984B LEU* 4.9 6.5 - - + -
988B GLU* 3.0 31.8 + - - +
989B ALA* 3.4 10.8 - - - +
991B VAL* 1.3 77.5 - - - +
993B ILE* 1.3 57.9 + - - +
995B ARG* 2.9 38.1 + - - +
996B LEU* 3.0 15.8 + - - +
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Residues in contact with ILE 993 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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748B GLU* 4.6 23.8 - - + +
749B CYS* 5.3 10.3 - - + -
752B LEU* 5.7 7.2 - - + -
977B LEU* 5.3 13.2 - - + +
980B ILE* 5.0 15.5 - - + -
981B LEU* 4.5 16.2 - - + -
989B ALA* 2.7 43.6 + - + +
990B GLU* 3.6 18.6 - - - +
992B GLN* 1.3 71.8 - - + +
994B ASP* 1.3 58.7 + - - +
996B LEU* 3.1 13.1 + - + +
997B ILE* 2.7 37.1 + - + +
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Residues in contact with ASP 994 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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970A PHE 4.3 10.4 - - - +
971A GLY* 5.3 2.4 + - - -
995A ARG* 5.9 4.5 - - - +
752B LEU* 5.0 14.6 - - + +
755B GLN* 6.0 0.2 - - - +
756B TYR* 3.4 28.8 + - - -
990B GLU 2.9 13.5 + - - +
991B VAL* 3.0 18.1 + - + +
993B ILE* 1.3 77.9 - - - +
995B ARG* 1.3 55.6 + - - +
997B ILE* 3.1 9.9 + - - +
998B THR* 2.8 31.9 + - - +
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Residues in contact with ARG 995 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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970B PHE* 2.2 42.6 + - - +
971B GLY* 2.8 28.4 + - - -
972B ALA* 6.1 0.2 - - + -
991B VAL* 2.9 16.4 + - + +
992B GLN* 2.9 25.4 + - - +
994B ASP* 1.3 74.5 - - - +
996B LEU* 1.3 68.9 + - + +
998B THR* 2.9 28.2 - - - +
999B GLY* 2.9 8.8 + - - -
756C TYR* 4.5 14.8 + - - -
994C ASP* 5.5 8.7 + - - -
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Residues in contact with LEU 996 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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742B ILE* 6.0 0.2 - - - -
969B ASN* 4.4 13.9 - - - +
970B PHE* 5.2 5.3 - - + -
972B ALA* 3.5 26.5 - - + -
974B SER 4.2 13.9 - - - +
975B SER* 5.0 0.9 - - - -
977B LEU* 5.0 9.0 - - + +
980B ILE* 4.4 16.4 - - + -
992B GLN 3.0 22.5 + - - +
993B ILE* 3.2 16.4 - - + +
995B ARG* 1.3 77.0 - - + +
997B ILE* 1.3 64.7 + - + +
999B GLY* 3.8 0.4 - - - -
1000B ARG* 3.0 68.0 + - + +
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Residues in contact with ILE 997 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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742B ILE* 3.4 34.0 - - + +
749B CYS* 4.8 14.8 - - - +
752B LEU* 4.7 19.1 - - + +
753B LEU* 5.1 8.3 - - + +
756B TYR* 4.3 27.4 - - + +
993B ILE* 2.7 30.2 + - + +
994B ASP* 3.1 14.1 + - - +
996B LEU* 1.3 73.7 - - + +
998B THR* 1.3 53.4 + - - +
1000B ARG* 3.7 1.4 - - - +
1001B LEU* 2.7 50.2 + - + +
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Residues in contact with THR 998 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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756B TYR* 5.3 3.8 - - - -
994B ASP* 2.8 25.7 + - - +
995B ARG* 2.9 37.2 - - + +
997B ILE* 1.3 76.6 - - - +
999B GLY* 1.3 58.0 + - - +
1001B LEU* 3.9 8.5 - - - +
1002B GLN* 2.1 67.9 + - - +
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Residues in contact with GLY 999 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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970B PHE* 3.6 36.0 - - - -
995B ARG 2.9 15.0 + - - -
996B LEU 3.8 0.4 - - - -
998B THR* 1.3 82.1 - - - +
1000B ARG* 1.3 64.2 + - - +
1001B LEU 2.9 0.2 + - - -
1002B GLN* 3.2 8.0 + - - +
1003B SER* 2.9 20.4 + - - -
759C PHE* 5.3 0.9 - - - -
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Residues in contact with ARG1000 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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741B TYR* 4.5 8.5 + - + -
742B ILE* 4.1 34.7 + - + +
965B GLN* 6.2 1.3 - - - -
966B LEU* 3.2 44.9 + - + +
968B SER 5.0 3.2 + - - -
970B PHE* 4.2 12.7 - - + -
975B SER* 2.4 38.6 + - - +
976B VAL* 4.0 1.0 - - - +
977B LEU* 3.6 33.5 - - - +
996B LEU* 3.0 39.7 + - - +
997B ILE* 4.1 1.6 - - - +
999B GLY* 1.3 73.8 - - - +
1001B LEU* 1.3 56.8 + - - +
1003B SER* 3.3 6.6 + - - -
1004B LEU* 2.9 34.6 + - - +
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Residues in contact with LEU1001 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002A GLN* 4.5 13.5 - - - +
738B CYS* 6.5 0.2 - - + -
742B ILE* 5.6 4.5 - - + -
753B LEU* 6.0 7.2 - - + -
756B TYR* 3.5 38.8 - - + -
759B PHE* 3.9 30.7 - - + -
760B CYS* 5.9 3.1 - - + -
997B ILE* 2.7 29.1 + - + +
998B THR* 3.4 6.7 - - - +
999B GLY 2.9 0.2 + - - -
1000B ARG* 1.3 74.8 - - - +
1002B GLN* 1.3 69.8 + - + +
1004B LEU* 3.1 20.7 - - + +
1005B GLN* 2.8 24.5 + - + +
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Residues in contact with GLN1002 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002A GLN* 4.6 15.3 - - - +
970B PHE* 6.3 0.4 - - - -
998B THR* 2.1 54.4 + - - +
999B GLY* 3.8 5.9 + - - +
1001B LEU* 1.3 75.7 - - + +
1003B SER* 1.3 57.1 + - - +
1005B GLN* 3.1 13.0 - - - +
1006B THR* 2.8 37.5 + - + +
759C PHE* 6.3 3.6 - - + -
998C THR* 4.1 17.6 + - - -
1001C LEU* 6.0 3.6 - - - +
1002C GLN* 6.0 4.0 - - - +
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Residues in contact with SER1003 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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741B TYR* 5.3 2.2 + - - -
962B LEU* 6.0 0.9 - - - +
965B GLN* 3.1 38.3 + - - +
970B PHE* 5.2 1.3 - - - -
999B GLY 2.9 14.0 + - - -
1000B ARG* 3.5 12.1 - - - -
1001B LEU 3.1 0.2 - - - -
1002B GLN* 1.3 76.3 - - - +
1004B LEU* 1.3 64.4 + - - +
1006B THR* 2.0 34.2 + - - -
1007B TYR* 2.9 6.0 + - - +
759C PHE* 4.2 18.8 - - - -
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Residues in contact with LEU1004 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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736B VAL* 6.3 2.7 - - + -
738B CYS* 5.7 6.1 - - + -
741B TYR* 4.6 21.0 + - + -
742B ILE* 3.6 31.0 - - + -
759B PHE* 4.3 5.4 - - + -
760B CYS* 5.9 0.2 - - + -
763B LEU* 3.5 31.9 - - + -
962B LEU* 5.0 9.2 - - + -
1000B ARG 2.9 21.4 + - - +
1001B LEU* 3.1 24.7 - - + +
1003B SER* 1.3 77.0 + - - +
1005B GLN* 1.3 62.2 + - - +
1007B TYR* 3.2 9.3 + - - +
1008B VAL* 2.9 33.9 + - + +
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Residues in contact with GLN1005 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002A GLN* 6.0 4.7 - - - +
1005A GLN* 5.9 1.8 - - - +
1006A THR* 3.7 26.8 - - + +
1009A THR* 5.8 0.2 + - - -
1010A GLN* 5.8 1.0 - - - +
759B PHE* 3.2 31.2 - - + -
1001B LEU* 2.8 19.9 + - + +
1002B GLN* 3.1 15.4 - - - +
1004B LEU* 1.3 82.0 - - - +
1006B THR* 1.3 69.7 + - - +
1008B VAL* 3.1 10.3 - - + +
1009B THR* 3.0 39.1 + - - +
1005C GLN* 4.5 10.9 + - - +
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Residues in contact with THR1006 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1002B GLN* 2.8 27.1 + - + +
1003B SER* 2.0 33.7 + - - -
1005B GLN* 1.3 80.3 - - - +
1007B TYR* 1.3 65.4 + - - +
1009B THR* 2.2 32.8 + - - -
1010B GLN* 2.7 21.3 + - - +
759C PHE* 5.5 9.2 - - + -
1005C GLN* 4.7 20.9 - - + +
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Residues in contact with TYR1007 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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734B THR* 4.1 15.1 + - - +
736B VAL* 5.0 12.6 - - + -
767B LEU* 5.4 4.0 - - + -
958B ALA* 4.1 29.2 - - + -
959B LEU* 3.7 20.6 - - + +
961B THR* 6.2 0.9 - - + -
962B LEU* 3.3 37.7 - - + -
1003B SER 2.9 5.9 + - - +
1004B LEU* 3.2 6.5 + - - +
1006B THR* 1.3 82.7 + - - +
1008B VAL* 1.3 69.9 + - + +
1010B GLN* 3.1 12.8 - - + +
1011B GLN* 2.3 78.1 + - + +
762C GLN* 6.2 1.6 - - - -
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Residues in contact with VAL1008 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1010A GLN* 6.0 7.9 - - + +
762B GLN* 5.7 0.7 - - - +
763B LEU* 3.9 47.3 - - + +
766B ALA* 6.4 1.8 - - + -
767B LEU* 5.9 9.6 - - + -
1004B LEU* 2.9 17.7 + - + +
1005B GLN* 3.1 13.2 - - + +
1007B TYR* 1.3 83.6 - - + +
1009B THR* 1.3 69.1 + - + +
1011B GLN* 3.8 1.9 - - - +
1012B LEU* 2.9 40.5 + - + +
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Residues in contact with THR1009 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1009A THR* 5.6 7.9 - - + +
1010A GLN* 5.4 9.9 - - - +
1005B GLN* 3.1 31.4 - - - +
1006B THR* 2.2 29.0 + - - -
1008B VAL* 1.3 82.2 - - + +
1010B GLN* 1.3 68.2 + - - +
1012B LEU* 2.8 24.6 + - - +
1013B ILE* 2.9 23.7 + - - +
1005C GLN* 5.0 9.3 + - - +
1009C THR* 5.3 9.3 - - + +
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Residues in contact with GLN1010 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1006B THR* 2.7 42.3 + - - +
1007B TYR* 3.1 13.8 + - + +
1009B THR* 1.3 83.7 + - - +
1011B GLN* 1.3 63.2 + - - +
1013B ILE* 2.9 24.4 + - + +
1014B ARG* 2.9 40.8 + - - +
762C GLN* 3.4 40.1 + - - +
763C LEU* 5.9 1.4 - - - +
1005C GLN* 6.4 0.2 - - - +
1009C THR* 6.4 1.3 - - + -
1012C LEU* 6.0 3.4 - - + -
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Residues in contact with GLN1011 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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731B MET* 2.8 47.7 - - - +
734B THR* 5.2 5.6 - - - +
767B LEU* 4.4 21.3 - - + -
770B ILE* 5.6 6.7 - - + +
958B ALA* 5.1 1.7 - - - +
959B LEU* 5.0 0.3 - - - +
1007B TYR* 2.3 64.5 + - + +
1008B VAL* 3.8 2.9 - - - +
1010B GLN* 1.3 75.5 - - - +
1012B LEU* 1.3 64.2 + - + +
1013B ILE 3.1 0.2 + - - -
1014B ARG* 3.3 7.7 + - - +
1015B ALA* 2.9 26.5 + - + +
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Residues in contact with LEU1012 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010A GLN* 5.5 11.4 - - + -
1013A ILE* 4.7 26.7 - - + +
766B ALA* 5.5 15.5 - - + +
767B LEU* 4.7 24.2 - - + +
770B ILE* 5.6 9.0 - - + -
1008B VAL* 2.9 33.8 + - + +
1009B THR* 2.8 16.9 + - - +
1011B GLN* 1.3 77.1 - - + +
1013B ILE* 1.3 56.9 + - + +
1015B ALA* 3.0 12.1 - - + +
1016B ALA* 2.9 23.9 + - - +
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Residues in contact with ILE1013 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1013A ILE* 5.2 7.2 - - + -
1009B THR* 2.9 25.5 + - - +
1010B GLN* 2.9 22.6 + - + +
1012B LEU* 1.3 75.8 - - + +
1014B ARG* 1.3 66.4 + - - +
1015B ALA 3.0 1.1 - - - -
1016B ALA* 2.8 28.3 + - + +
1017B GLU* 2.9 13.4 + - + +
1009C THR* 5.3 6.7 - - + -
1012C LEU* 4.3 43.5 - - + +
1013C ILE* 4.6 20.6 - - + -
1016C ALA* 5.8 5.2 - - + -
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Residues in contact with ARG1014 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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731B MET* 4.9 11.7 - - + -
954B GLN* 2.7 48.3 - - + +
958B ALA* 6.3 2.2 - - - -
1010B GLN* 2.9 55.2 + - - +
1011B GLN* 3.7 17.9 - - - +
1013B ILE* 1.3 81.9 - - - +
1015B ALA* 1.3 57.2 + - - +
1017B GLU* 3.3 6.1 + - - +
1018B ILE* 2.7 34.3 + - + +
762C GLN* 4.9 8.3 + - - -
765C ARG* 6.2 0.2 - - - +
766C ALA* 4.2 24.0 - - - +
1012C LEU* 6.1 4.9 - - - +
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Residues in contact with ALA1015 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
731B MET* 6.1 0.2 - - - -
770B ILE* 3.5 37.5 - - + +
1011B GLN* 2.9 18.0 + - - +
1012B LEU* 3.0 20.2 - - + +
1013B ILE 3.0 0.2 - - - -
1014B ARG* 1.3 75.3 - - - +
1016B ALA* 1.3 64.5 + - - +
1018B ILE* 3.1 11.2 - - - +
1019B ARG* 2.8 27.1 + - - +
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Residues in contact with ALA1016 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1013A ILE* 4.8 13.9 - - + -
1016A ALA* 5.5 9.2 - - + -
1017A GLU* 6.0 1.8 - - - -
1012B LEU 2.9 11.7 + - - +
1013B ILE* 2.8 18.5 + - + +
1015B ALA* 1.3 76.9 - - - +
1017B GLU* 1.3 63.5 + - - +
1019B ARG* 3.2 5.7 + - - +
1020B ALA* 3.0 22.7 + - - +
1016C ALA* 5.3 11.7 - - + -
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Residues in contact with GLU1017 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728B PRO* 6.0 0.2 - - - +
1013B ILE* 2.9 11.6 + - + +
1014B ARG* 3.9 8.7 - - - +
1016B ALA* 1.3 76.9 - - - +
1018B ILE* 1.3 57.1 + - + +
1019B ARG 3.2 0.2 + - - -
1020B ALA* 3.2 8.6 + - - +
1021B SER* 2.7 48.4 + - - -
773C GLU* 6.1 0.9 - - - +
1016C ALA* 6.0 7.4 - - + +
1019C ARG* 2.5 46.9 + - - +
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Residues in contact with ILE1018 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728B PRO* 3.5 44.0 - - + +
729B VAL 4.1 3.8 - - - +
730B SER 3.7 24.0 - - - +
731B MET* 5.7 4.9 - - + -
770B ILE* 6.0 2.0 - - + -
774B GLN* 4.2 14.4 - - + +
777B ASN* 5.4 3.8 - - - +
951B VAL* 4.9 5.2 - - + -
1014B ARG* 2.7 21.4 + - + +
1015B ALA* 3.1 19.3 - - - +
1017B GLU* 1.3 72.2 - - + +
1019B ARG* 1.3 55.7 + - + +
1021B SER* 2.3 27.7 + - - +
1022B ALA* 2.7 24.1 + - + +
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Residues in contact with ARG1019 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017A GLU* 5.0 21.5 - - - +
770B ILE* 5.6 3.9 - - - +
773B GLU* 2.6 54.8 + - - +
776B LYS* 3.1 18.4 - - - +
777B ASN* 3.0 30.0 + - - +
780B GLU* 5.1 1.6 + - - -
1015B ALA 2.8 19.3 + - - +
1016B ALA* 3.5 4.7 - - - +
1018B ILE* 1.3 78.6 - - + +
1020B ALA* 1.3 70.3 + - - +
1022B ALA* 2.8 15.6 + - + +
1023B ASN* 3.0 15.4 + - + +
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Residues in contact with ALA1020 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1020A ALA* 6.1 6.3 - - + -
1016B ALA 3.0 12.8 + - - +
1017B GLU* 3.5 14.1 - - - +
1019B ARG* 1.3 78.8 - - - +
1021B SER* 1.3 65.4 + - - +
1022B ALA 2.9 0.3 + - - -
1023B ASN* 3.3 3.5 + - - +
1024B LEU* 2.9 20.8 + - - +
1020C ALA* 5.3 12.6 - - + -
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Residues in contact with SER1021 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727B LEU* 5.4 2.3 - - - +
728B PRO* 4.5 17.5 - - - +
1017B GLU* 2.7 27.0 + - - -
1018B ILE* 2.3 42.8 + - - +
1020B ALA* 1.3 73.9 - - - +
1022B ALA* 1.3 55.6 - - - +
1024B LEU* 3.1 18.3 - - - +
1025B ALA* 2.8 29.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA1022 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
728B PRO 4.8 5.2 - - - -
729B VAL* 4.6 11.2 - - + +
777B ASN* 4.0 30.5 - - + +
780B GLU* 6.3 0.4 - - - -
781B VAL* 4.6 2.4 - - + +
1018B ILE 2.7 18.3 + - - +
1019B ARG* 2.8 17.7 + - + +
1021B SER* 1.3 71.2 - - - +
1023B ASN* 1.3 58.2 + - - +
1025B ALA* 2.6 29.5 + - - +
1026B ALA* 2.8 13.4 + - - +
----------------------------------------------------------
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Residues in contact with ASN1023 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024A LEU* 3.8 27.6 - - - +
780B GLU* 4.2 18.6 + - - +
1019B ARG* 3.0 11.4 + - + +
1020B ALA* 4.1 2.7 - - - +
1022B ALA* 1.3 78.0 - - - +
1024B LEU* 1.3 65.2 + - - +
1026B ALA* 4.4 9.9 - - - +
1027B THR* 2.8 35.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU1024 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727B LEU* 5.6 5.8 - - + -
1020B ALA 2.9 15.0 + - - +
1021B SER* 3.1 20.0 - - - +
1023B ASN* 1.3 78.1 + - - +
1025B ALA* 1.3 62.5 + - - +
1027B THR* 3.3 6.5 - - + -
1028B LYS* 2.9 53.0 + - + +
1042B PHE* 4.4 12.8 - - + -
1023C ASN* 5.5 11.0 - - + +
----------------------------------------------------------
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Residues in contact with ALA1025 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727B LEU* 3.8 35.9 - - + +
728B PRO 5.0 3.4 - - - +
729B VAL* 5.2 1.3 - - + -
781B VAL* 4.8 8.7 - - + -
1021B SER 2.8 12.0 + - - +
1022B ALA* 2.6 16.6 + - - +
1024B LEU* 1.3 69.2 - - - +
1026B ALA* 1.3 59.5 + - - +
1028B LYS* 2.4 29.0 + - - +
1029B MET* 2.9 12.1 + - - +
1060B VAL* 4.8 9.6 - - + -
1062B PHE* 5.1 4.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA1026 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1041A ASP* 6.0 0.2 - - - -
780B GLU* 3.4 37.7 - - + +
781B VAL* 3.6 27.3 - - + +
784B GLN* 5.7 0.5 - - - -
1022B ALA 2.8 13.5 + - - +
1023B ASN* 3.9 9.9 - - - +
1025B ALA* 1.3 72.4 - - - +
1027B THR* 1.3 67.0 + - - +
1029B MET* 3.4 6.1 + - - +
1030B SER* 2.9 20.6 + - - -
----------------------------------------------------------
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Residues in contact with THR1027 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1039A ARG* 4.5 1.3 - - - +
1042A PHE* 4.7 9.2 - - - -
1023B ASN* 2.8 30.4 + - - +
1024B LEU* 3.3 9.2 - - + +
1026B ALA* 1.3 73.6 - - - +
1028B LYS* 1.3 57.6 + - - +
1030B SER* 2.2 42.6 + - - -
1031B GLU* 2.8 40.2 + - - +
1042B PHE* 3.6 14.4 - - + -
----------------------------------------------------------
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Residues in contact with LYS1028 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
725B GLU* 3.2 31.6 - - - +
727B LEU* 3.6 11.9 - - + -
1024B LEU* 2.9 38.5 + - - +
1025B ALA* 2.4 19.5 + - - +
1027B THR* 1.3 73.2 - - - +
1029B MET* 1.3 64.5 + - - +
1032B CYS* 2.9 32.1 + - - -
1041B ASP 5.1 0.2 + - - -
1042B PHE* 3.1 67.2 + - + +
1043B CYS* 4.4 7.0 - - - -
1062B PHE* 4.7 10.1 - - + -
----------------------------------------------------------
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Residues in contact with MET1029 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781B VAL* 3.0 28.7 - - + +
782B PHE* 4.5 15.9 - - + -
784B GLN* 4.5 6.1 - - + -
874B THR* 5.8 2.7 - - + -
877B LEU* 3.7 27.4 - - + -
1025B ALA 2.9 8.0 + - - +
1026B ALA* 3.8 7.6 - - - +
1028B LYS* 1.3 77.5 - - - +
1030B SER* 1.3 68.5 + - - +
1031B GLU 3.1 1.0 + - - -
1032B CYS* 4.8 0.7 - - - -
1033B VAL* 3.3 26.6 + - + +
1034B LEU* 3.2 16.8 - - + +
1053B PRO* 3.8 28.5 - - + -
1054B GLN 5.6 0.9 - - - +
1062B PHE* 4.4 27.8 - - + -
----------------------------------------------------------
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Residues in contact with SER1030 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1040A VAL* 4.3 11.0 + - - +
1041A ASP* 3.7 32.1 + - - +
784B GLN* 5.0 8.1 - - - -
1026B ALA 2.9 12.2 + - - -
1027B THR* 2.2 41.5 + - - -
1029B MET* 1.3 75.3 - - - +
1031B GLU* 1.3 63.1 + - - +
1034B LEU* 3.2 35.9 - - - +
1035B GLY 4.8 0.9 + - - -
----------------------------------------------------------
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Residues in contact with GLU1031 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1039A ARG* 2.5 44.7 + - + +
1040A VAL* 4.1 19.2 - - - +
1042A PHE* 3.9 6.6 + - - -
1027B THR* 2.8 47.6 + - - +
1028B LYS* 3.9 1.6 - - - +
1030B SER* 1.3 86.3 - - - +
1032B CYS* 1.3 61.2 + - - +
1033B VAL 3.4 1.3 + - - -
1035B GLY* 4.0 16.9 + - - -
1036B GLN 4.3 0.3 + - - -
1037B SER* 4.2 15.4 + - - -
1039B ARG* 5.0 2.8 + - - -
1042B PHE* 3.5 16.6 - - + -
----------------------------------------------------------
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Residues in contact with CYS1032 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028B LYS* 2.9 29.5 + - - -
1029B MET* 4.8 2.0 - - - -
1031B GLU* 1.3 76.3 - - + +
1033B VAL* 1.3 58.0 + - - +
1035B GLY 4.0 7.0 - - - -
1037B SER* 5.1 6.1 - - - +
1042B PHE* 4.7 2.2 - - + -
1043B CYS* 2.0 54.7 - - + -
1048B HIS* 3.4 14.8 + - + -
1050B MET* 4.1 2.9 - - - -
1051B SER* 3.4 33.8 + - - -
1062B PHE* 6.1 2.7 - - - -
1064B HIS* 5.2 1.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL1033 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877B LEU* 5.3 9.6 - - + -
881B THR* 3.5 34.3 + - + +
905B ARG* 4.9 4.0 + - - -
1029B MET* 3.3 27.6 + - + +
1031B GLU 3.4 0.4 - - - -
1032B CYS* 1.3 83.9 - - - +
1034B LEU* 1.3 67.6 + - + +
1035B GLY* 2.8 16.8 + - - +
1050B MET* 4.8 6.5 - - + +
1051B SER* 3.3 33.0 - - - +
1052B PHE 4.9 0.9 - - - +
1053B PRO* 5.0 19.1 - - + -
1062B PHE* 6.2 3.1 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il