Contacts of the helix formed by residues 563 - 594 (chain G) in PDB entry 7CR3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 563 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A ARG* 3.8 19.2 + - - -
564D VAL* 4.7 11.2 - - + +
568D ILE* 4.0 7.4 - - - +
322G GLU* 4.5 16.5 - - - +
325G ARG* 3.6 40.5 + - + +
326G GLN* 4.9 5.0 - - - +
329G PHE* 4.6 15.3 - - + -
562G TYR* 1.3 80.0 - - - +
564G VAL* 1.3 81.5 + - - +
566G ASP* 3.5 14.7 + - - +
567G VAL* 3.7 8.5 + - - +
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Residues in contact with VAL 564 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A ARG* 4.1 31.6 - - + +
329A PHE* 3.8 30.1 - - + -
563A ASP* 4.7 16.2 - - + +
562G TYR* 5.1 4.3 - - + -
563G ASP* 1.3 89.9 + - - +
565G MET* 1.3 66.7 + - + +
566G ASP 3.1 0.4 - - - -
567G VAL* 3.2 11.4 - - + +
568G ILE* 2.9 43.4 + - + +
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Residues in contact with MET 565 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A HIS* 3.9 30.7 - - + +
329A PHE* 3.5 34.1 - - + -
560G ARG 5.5 4.0 - - - +
561G PRO* 5.8 0.4 - - + -
562G TYR* 3.5 42.0 - - + +
563G ASP 3.4 0.4 - - - -
564G VAL* 1.3 79.9 - - + +
566G ASP* 1.3 58.4 + - - +
569G GLU* 2.7 54.3 + - - +
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Residues in contact with ASP 566 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568D ILE* 3.7 26.0 - - + +
329G PHE* 4.9 10.3 - - + +
331G LYS* 5.2 8.1 - - - +
561G PRO* 4.8 12.5 - - - +
562G TYR 3.2 24.7 + - - +
563G ASP 3.5 7.0 - - - +
564G VAL 3.1 0.2 - - - -
565G MET* 1.3 77.0 - - - +
567G VAL* 1.3 59.0 + - - +
569G GLU* 5.3 0.2 - - - -
570G GLN* 2.9 52.2 + - - +
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Residues in contact with VAL 567 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567A VAL* 4.1 27.1 - - + -
567D VAL* 4.1 26.9 - - + -
568D ILE* 4.2 13.1 - - + +
571D TYR* 4.4 11.3 - - + -
563G ASP 3.7 8.9 + - - +
564G VAL* 3.2 23.3 - - + +
566G ASP* 1.3 77.4 - - - +
568G ILE* 1.3 63.8 + - + +
570G GLN* 4.8 2.5 - - - -
571G TYR* 2.9 40.1 + - + +
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Residues in contact with ILE 568 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A PHE* 4.1 22.7 - - + -
331A LYS* 5.3 9.9 - - - -
563A ASP 4.0 10.1 - - - +
566A ASP* 3.7 41.7 - - + +
567A VAL* 4.2 15.9 - - + +
570A GLN* 5.0 2.7 - - - +
564G VAL* 2.9 35.2 + - + +
565G MET* 4.3 1.1 - - - -
567G VAL* 1.3 79.4 - - + +
569G GLU* 1.3 77.2 + - - +
571G TYR* 3.8 2.3 - - - +
572G SER* 3.0 25.8 + - - +
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Residues in contact with GLU 569 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329A PHE* 4.4 8.0 - - - -
331A LYS* 4.9 14.7 + - - +
565G MET* 2.7 62.3 + - - +
568G ILE* 1.3 84.2 - - - +
570G GLN* 1.3 58.1 + - - +
572G SER* 2.6 21.2 + - - +
573G ALA* 2.9 18.1 + - - +
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Residues in contact with GLN 570 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
568D ILE* 5.0 2.6 - - - +
571D TYR* 2.9 40.3 + - + +
572D SER* 3.9 29.5 + - - +
575D HIS* 4.1 19.2 + - + +
566G ASP* 2.9 33.5 + - - +
567G VAL* 5.4 0.2 - - - -
569G GLU* 1.3 77.1 - - - +
571G TYR* 1.3 57.3 + - - +
573G ALA* 4.2 6.5 - - + -
574G GLY* 2.7 21.5 + - - -
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Residues in contact with TYR 571 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
567A VAL* 4.7 14.4 - - + -
570A GLN* 2.9 61.5 + - + +
571A TYR* 3.1 36.5 - + + -
574A GLY* 3.3 14.0 - - - -
578A MET* 4.9 1.7 - - + +
571D TYR* 3.1 28.2 - + + -
567G VAL* 2.9 25.5 + - + +
568G ILE* 3.9 2.7 - - + +
570G GLN* 1.3 76.6 - - - +
572G SER* 1.3 61.2 + - - +
575G HIS* 2.8 40.3 + - + +
578G MET* 4.5 11.9 - - + -
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Residues in contact with SER 572 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331A LYS* 4.6 17.6 + - - -
570A GLN* 3.9 18.2 + - - +
568G ILE* 3.0 16.7 + - - +
569G GLU* 2.6 28.2 + - - +
571G TYR* 1.3 75.1 - - - +
573G ALA* 1.3 60.0 + - - -
575G HIS* 4.1 0.9 - - - +
576G LEU* 3.0 33.5 + - - +
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Residues in contact with ALA 573 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575D HIS* 5.5 1.3 - - + -
569G GLU 2.9 18.6 + - - +
570G GLN* 4.0 8.5 - - + +
572G SER* 1.3 77.8 + - - +
574G GLY* 1.3 55.0 + - - +
576G LEU* 3.2 14.7 - - + +
577G ASP* 2.6 45.6 + - - +
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Residues in contact with GLY 574 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
571D TYR* 3.3 17.0 - - - -
575D HIS* 3.4 25.0 + - - -
570G GLN 2.7 16.0 + - - -
571G TYR 3.4 0.2 + - - -
572G SER 3.4 0.2 - - - -
573G ALA* 1.3 73.9 - - - +
575G HIS* 1.3 57.2 + - - +
577G ASP* 3.5 2.8 + - - +
578G MET* 2.9 36.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 575 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
570A GLN* 4.1 23.4 + - + +
573A ALA* 4.6 1.8 - - + -
574A GLY* 3.4 30.8 + - - -
577A ASP* 3.4 27.7 + - - +
581A ARG* 3.6 22.2 + - - -
571D TYR* 4.3 0.6 + - - -
571G TYR* 2.8 29.3 + + + +
572G SER 4.2 0.4 - - - +
574G GLY* 1.3 70.8 - - - -
576G LEU* 1.3 60.8 + - - +
578G MET* 3.1 18.4 + - + +
579G LEU* 2.8 42.5 + - + +
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Residues in contact with LEU 576 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
572G SER* 3.0 26.7 + - - +
573G ALA* 3.2 23.8 - - + +
575G HIS* 1.3 74.4 - - - +
577G ASP* 1.3 90.4 + - - +
579G LEU* 3.0 20.7 + - + +
580G SER* 3.0 19.8 + - - -
----------------------------------------------------------
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Residues in contact with ASP 577 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
575D HIS* 3.4 24.9 - - - +
579D LEU* 6.1 1.6 - - + -
573G ALA* 2.6 32.6 + - - +
574G GLY 3.7 4.0 - - - +
576G LEU* 1.3 86.8 - - - +
578G MET* 1.3 57.7 + - - +
580G SER* 2.3 27.6 + - - +
581G ARG* 2.8 26.3 + - - +
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Residues in contact with MET 578 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578A MET* 3.8 42.6 - - + +
581A ARG* 2.3 36.7 + - - +
571D TYR* 4.9 1.6 - - + +
578D MET* 3.8 39.0 - - + +
571G TYR* 4.5 11.9 - - + -
574G GLY* 2.9 25.4 + - - +
575G HIS* 3.1 30.9 + - + +
577G ASP* 1.3 75.7 - - - +
579G LEU* 1.3 53.5 + - - +
581G ARG* 3.0 16.8 + - - +
582G ILE 2.9 16.6 + - - -
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Residues in contact with LEU 579 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
577A ASP* 5.9 1.8 - - + +
581A ARG* 3.2 20.8 - - - +
575G HIS* 2.8 40.4 + - + +
576G LEU* 3.0 19.5 + - + +
578G MET* 1.3 73.2 - - - +
580G SER* 1.3 61.0 + - - +
582G ILE* 3.1 8.9 - - + +
583G LYS* 3.0 27.5 + - - +
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Residues in contact with SER 580 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
576G LEU 3.0 7.6 + - - -
577G ASP* 2.3 38.1 + - - +
579G LEU* 1.3 76.2 - - - +
581G ARG* 1.3 49.4 + - - +
583G LYS* 3.2 22.5 - - - +
584G SER* 2.5 37.8 + - - -
----------------------------------------------------------
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Residues in contact with ARG 581 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581A ARG* 4.4 2.7 - - - +
575D HIS* 3.6 9.2 + - - -
578D MET* 2.3 65.8 + - - +
579D LEU* 3.2 25.7 - - - +
581D ARG* 4.4 2.8 - - - +
582D ILE* 3.5 41.9 - - + +
585D LEU* 5.1 1.8 - - + +
577G ASP* 2.8 27.2 + - + +
578G MET* 3.0 25.3 + - - +
580G SER* 1.3 78.6 - - - +
582G ILE* 1.3 58.2 + - - +
584G SER* 2.6 19.0 + - - -
585G LEU* 2.8 20.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 582 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581A ARG* 3.5 57.4 - - + +
584A SER* 4.1 1.8 - - - +
578G MET 2.9 16.8 + - - +
579G LEU* 3.1 24.2 - - + +
581G ARG* 1.3 73.3 - - - +
583G LYS* 1.3 58.3 + - + +
585G LEU* 3.2 18.9 + - + +
586G GLN* 2.9 60.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 583 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
579G LEU 3.0 23.2 + - - +
580G SER* 3.2 30.1 - - - +
582G ILE* 1.3 76.8 - - + +
584G SER* 1.3 67.5 + - - +
586G GLN* 3.4 5.9 + - - +
587G SER* 2.6 39.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 584 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
582D ILE* 4.1 1.6 - - - +
585D LEU* 5.3 0.2 - - - -
586D GLN* 3.5 30.1 + - - -
580G SER 2.5 26.3 + - - -
581G ARG* 2.6 18.7 + - - -
583G LYS* 1.3 81.7 - - - +
585G LEU* 1.3 59.0 + - - +
587G SER* 2.9 7.9 + - - -
588G ARG* 2.9 38.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 585 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581A ARG* 5.1 2.5 - - + +
584A SER 5.3 0.9 - - - +
585A LEU* 3.9 42.4 - - + -
588A ARG* 5.6 1.3 - - + -
589A VAL* 6.4 0.4 - - + -
585D LEU* 3.9 35.0 - - + -
581G ARG 2.8 18.5 + - - +
582G ILE* 3.3 23.3 - - + +
584G SER* 1.3 72.7 + - - +
586G GLN* 1.3 80.1 + - - +
588G ARG* 4.1 0.8 - - - +
589G VAL* 2.9 49.1 + - + +
----------------------------------------------------------
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Residues in contact with GLN 586 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584A SER* 3.5 29.0 + - - -
588A ARG* 3.2 40.3 - - - +
582G ILE* 2.9 30.0 + - + +
583G LYS* 4.0 5.2 - - - +
585G LEU* 1.3 87.9 - - - +
587G SER* 1.3 58.7 + - - +
589G VAL* 3.2 3.0 - - - +
590G ASP* 2.9 36.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 587 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583G LYS* 2.6 26.0 + - - +
584G SER* 2.9 18.0 + - - -
586G GLN* 1.3 76.5 - - - +
588G ARG* 1.3 58.0 + - - +
590G ASP* 3.2 8.1 + - - +
591G GLN* 2.9 32.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 588 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585D LEU* 5.7 0.9 - - + -
586D GLN* 3.2 41.4 + - - +
589D VAL* 3.8 20.4 - - + -
590D ASP* 2.4 40.1 + - - -
593D VAL* 5.5 2.4 - - - +
584G SER* 2.9 22.7 + - - +
585G LEU* 4.1 2.2 - - - +
587G SER* 1.3 76.0 - - - +
589G VAL* 1.3 62.9 + - + +
591G GLN* 3.1 24.0 + - - +
592G ILE* 2.9 30.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL 589 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588A ARG* 3.8 31.4 - - + -
589A VAL* 5.2 13.2 - - + -
592A ILE* 4.0 8.5 - - + +
585D LEU* 6.4 0.7 - - + -
589D VAL* 5.2 11.9 - - + -
585G LEU* 2.9 40.4 + - + +
586G GLN* 3.2 18.6 - - - +
588G ARG* 1.3 77.3 - - + +
590G ASP* 1.3 58.3 + - - +
592G ILE* 3.2 14.0 + - + +
593G VAL* 2.9 29.5 + - + +
----------------------------------------------------------
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Residues in contact with ASP 590 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588A ARG* 2.4 37.4 + - - -
586G GLN 2.9 16.0 + - - +
587G SER* 3.4 8.1 - - - +
589G VAL* 1.3 76.7 - - - +
591G GLN* 1.3 53.4 + - - +
592G ILE 3.1 0.2 - - - -
593G VAL* 2.9 15.3 + - + +
594G GLY* 2.4 34.7 + - - -
----------------------------------------------------------
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Residues in contact with GLN 591 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
593D VAL* 5.1 12.5 - - + +
587G SER* 2.9 18.6 + - - +
588G ARG* 3.1 27.4 + - - +
590G ASP* 1.3 75.7 - - - +
592G ILE* 1.3 64.7 + - + +
594G GLY* 3.9 4.0 - - - +
595G ARG* 3.5 24.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 592 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
592A ILE* 3.9 30.2 - - + +
595A ARG* 3.2 11.3 + - - -
589D VAL* 4.0 11.4 - - + +
592D ILE* 3.9 33.4 - - + -
593D VAL* 3.7 31.0 - - + +
588G ARG* 2.9 16.1 + - + +
589G VAL* 3.3 15.9 - - + +
590G ASP 3.1 0.2 - - - -
591G GLN* 1.3 79.1 - - - +
593G VAL* 1.3 61.3 + - - +
595G ARG* 3.6 17.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL 593 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588A ARG* 5.5 3.8 - - + +
591A GLN* 5.1 13.7 - - + +
592A ILE* 3.7 18.4 - - + -
595A ARG* 2.6 47.0 + - - +
589G VAL* 2.9 21.1 + - + +
590G ASP* 2.9 19.3 + - + +
592G ILE* 1.3 74.2 - - - +
594G GLY* 1.3 62.4 + - - +
595G ARG 3.1 0.4 - - - -
----------------------------------------------------------
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Residues in contact with GLY 594 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
590G ASP 2.4 23.4 + - - -
591G GLN* 3.5 6.2 + - - -
592G ILE 3.3 0.8 - - - -
593G VAL* 1.3 68.8 - - - +
595G ARG* 1.3 59.2 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il