Contacts of the helix formed by residues 262 - 295 (chain F) in PDB entry 7KHI


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with VAL 262 (chain F).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    159F  SER      4.2     4.9    -      -       -      +
    160F  ASP*     3.7    11.4    -      -       -      +
    161F  LEU      3.3    31.1    +      -       -      +
    162F  ILE*     3.4     6.0    -      -       -      +
    163F  THR*     3.5    24.5    -      -       +      -
    260F  ARG      4.3     0.2    +      -       -      -
    261F  LEU*     1.3    71.8    -      -       -      +
    263F  PRO*     1.3    74.3    -      -       +      +
    264F  LYS*     4.0     9.9    -      -       +      +
    265F  GLN*     2.7    45.9    +      -       +      +
    266F  PHE      3.0     8.3    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with PRO 263 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    163F  THR*     5.0     8.5    -      -       +      +
    261F  LEU      3.4     5.1    -      -       -      +
    262F  VAL*     1.3    85.5    -      -       +      +
    264F  LYS*     1.3    62.7    -      -       -      +
    266F  PHE*     3.1     9.1    +      -       +      +
    267F  ASP*     2.9    31.3    +      -       -      +
    418F  LYS*     6.1     2.9    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 264 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    143F  TYR*     5.0     0.6    +      -       -      -
    147F  GLN*     4.8     6.3    -      -       -      +
    160F  ASP      5.9     0.2    -      -       -      +
    262F  VAL*     3.2     8.8    -      -       +      +
    263F  PRO*     1.3    78.1    -      -       -      +
    265F  GLN*     1.3    86.5    +      -       +      +
    267F  ASP*     3.3    11.3    +      -       +      +
    268F  TYR*     2.9    42.9    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLN 265 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    143F  TYR*     3.9    14.7    +      -       -      -
    147F  GLN*     2.9    33.3    +      -       -      +
    160F  ASP*     3.9    12.6    +      -       -      +
    161F  LEU*     3.9    18.0    -      -       +      +
    261F  LEU*     4.1    16.2    -      -       +      -
    262F  VAL*     2.7    33.1    +      -       +      +
    264F  LYS*     1.3    93.1    +      -       -      +
    266F  PHE*     1.3    60.4    +      -       -      +
    268F  TYR*     3.2     7.4    +      -       -      +
    269F  LEU*     2.8    34.1    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with PHE 266 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    127F  ILE*     4.9     8.7    -      -       +      -
    130F  VAL*     4.0    28.5    -      -       +      -
    131F  GLN*     3.6    43.3    -      -       +      -
    134F  VAL*     4.8     3.8    -      -       +      -
    261F  LEU*     4.4    12.7    -      -       +      +
    262F  VAL      3.0    10.8    +      -       -      +
    263F  PRO*     3.5    12.3    -      -       +      +
    265F  GLN*     1.3    75.8    -      -       -      +
    267F  ASP*     1.3    70.9    +      -       -      +
    269F  LEU*     3.1    29.5    -      -       +      +
    270F  VAL*     3.0    32.8    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ASP 267 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    263F  PRO*     2.9    20.1    +      -       -      +
    264F  LYS*     3.5    10.9    -      -       +      +
    266F  PHE*     1.3    83.9    -      -       -      +
    268F  TYR*     1.3    56.6    +      -       -      +
    270F  VAL*     2.9    26.2    -      -       -      +
    271F  ASN*     2.9    17.3    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with TYR 268 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    143F  TYR*     3.2    54.1    +      +       -      -
    264F  LYS*     2.9    33.0    +      -       -      +
    265F  GLN*     3.2    10.7    +      -       -      +
    267F  ASP*     1.3    76.5    -      -       -      +
    269F  LEU*     1.3    57.8    +      -       -      +
    271F  ASN*     3.6    17.4    -      -       -      +
    272F  SER*     2.8    40.3    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 269 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    134F  VAL*     3.5    42.8    -      -       +      -
    137F  TYR*     4.5     2.6    +      -       -      +
    140F  ALA*     6.2     3.1    -      -       +      -
    143F  TYR*     5.7     7.6    -      -       +      -
    256F  PHE*     6.3     0.9    -      -       +      -
    261F  LEU*     3.1    35.2    -      -       +      -
    265F  GLN*     2.8    18.6    +      -       +      +
    266F  PHE*     3.1    32.8    -      -       +      +
    268F  TYR*     1.3    75.2    -      -       -      +
    270F  VAL*     1.3    78.4    +      -       +      +
    271F  ASN      3.1     1.6    -      -       -      -
    272F  SER*     2.7    21.0    +      -       -      +
    273F  MET*     3.0    15.1    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 270 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130F  VAL*     5.5     9.2    -      -       +      -
    134F  VAL*     5.6     1.6    -      -       +      -
    266F  PHE*     3.0    27.3    +      -       +      +
    267F  ASP*     2.9    34.1    -      -       -      +
    269F  LEU*     1.3    84.8    -      -       +      +
    271F  ASN*     1.3    57.1    +      -       -      +
    273F  MET*     3.5    16.3    +      -       +      +
    274F  ARG*     2.8    50.7    +      -       -      +
    365F  MET*     6.5     0.4    -      -       +      -
    369F  GLU*     5.0     9.2    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ASN 271 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    267F  ASP      2.9    17.6    +      -       -      +
    268F  TYR*     3.6    21.0    +      -       -      +
    270F  VAL*     1.3    78.0    -      -       +      +
    272F  SER*     1.3    61.3    +      -       -      +
    274F  ARG*     3.5     9.8    -      -       -      +
    275F  VAL*     2.8    32.8    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with SER 272 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    137F  TYR*     4.9     3.1    +      -       -      -
    143F  TYR*     5.7     3.4    -      -       -      -
    268F  TYR*     2.8    31.5    +      -       -      -
    269F  LEU*     2.7    22.9    +      -       -      +
    271F  ASN*     1.3    75.3    -      -       -      +
    273F  MET*     1.3    56.8    +      -       -      +
    275F  VAL*     2.9    28.8    -      -       -      +
    276F  MET*     3.0    14.5    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 273 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    130F  VAL*     5.9     1.3    -      -       +      -
    133F  SER*     5.4     1.1    -      -       -      +
    134F  VAL*     4.6    23.3    -      -       +      -
    137F  TYR*     3.2    43.9    +      -       +      +
    269F  LEU*     3.0    13.0    +      -       +      +
    270F  VAL*     4.2    25.6    -      -       +      +
    272F  SER*     1.3    74.5    -      -       -      +
    274F  ARG*     1.3    63.1    +      -       -      +
    276F  MET*     3.0    22.2    -      -       -      +
    277F  MET*     2.9    28.5    +      -       +      +
    361F  ILE*     5.1     6.1    -      -       +      -
    365F  MET*     3.3    47.1    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 274 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    270F  VAL*     2.8    38.5    +      -       -      +
    271F  ASN*     3.5    14.6    -      -       -      +
    273F  MET*     1.3    79.0    -      -       -      +
    275F  VAL*     1.3    51.2    +      -       -      +
    277F  MET*     3.3    10.2    +      -       -      +
    278F  ASP*     2.5    56.6    +      -       -      +
    365F  MET*     3.6    31.7    -      -       -      +
    369F  GLU*     3.8    22.6    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 275 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    271F  ASN*     2.8    23.3    +      -       -      +
    272F  SER*     2.9    30.7    -      -       -      +
    274F  ARG*     1.3    72.4    -      -       -      +
    276F  MET*     1.3    62.0    +      -       +      +
    278F  ASP*     3.2    15.0    +      -       +      +
    279F  ARG*     2.9    35.0    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 276 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    137F  TYR*     5.1    14.6    -      -       +      -
    139F  GLU*     4.3    17.7    -      -       -      +
    272F  SER      3.0    17.5    +      -       -      +
    273F  MET*     3.0    33.0    -      -       +      +
    275F  VAL*     1.3    77.4    -      -       +      +
    277F  MET*     1.3    90.2    +      -       +      +
    279F  ARG*     3.1    11.0    +      -       -      +
    280F  VAL*     2.9    43.0    +      -       +      +
    347F  ILE*     4.8     8.1    -      -       +      +
    348F  GLU*     5.8     0.4    -      -       -      +
    351F  THR*     4.1    20.4    -      -       +      +
    358F  VAL*     6.0     4.7    -      -       +      -
    361F  ILE*     5.9     2.5    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 277 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273F  MET*     2.9    16.2    +      -       +      +
    274F  ARG*     3.7    13.5    -      -       -      +
    276F  MET*     1.3    93.0    -      -       +      +
    278F  ASP*     1.3    58.3    +      -       -      +
    280F  VAL*     3.3    13.6    +      -       +      -
    281F  ARG*     2.8    57.9    +      -       -      +
    358F  VAL*     3.8    38.4    -      -       +      +
    361F  ILE*     4.5    10.3    -      -       +      -
    362F  ASN*     3.9    24.2    -      -       +      +
    365F  MET*     5.7     4.9    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ASP 278 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    274F  ARG*     2.5    54.0    +      -       -      +
    275F  VAL*     3.3    19.7    -      -       +      +
    276F  MET      3.2     0.2    -      -       -      -
    277F  MET*     1.3    73.0    -      -       -      +
    279F  ARG*     1.3    54.2    +      -       +      +
    281F  ARG*     4.7    10.6    +      -       -      +
    282F  THR*     2.7    48.7    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 279 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    275F  VAL*     2.9    21.3    +      -       +      +
    276F  MET*     3.1    11.9    +      -       -      +
    278F  ASP*     1.3    75.2    -      -       +      +
    280F  VAL*     1.3    64.3    +      -       +      +
    282F  THR*     2.9    17.4    +      -       -      -
    283F  GLN*     2.9    39.5    +      -       -      +
    343F  LYS*     4.0    20.8    -      -       -      +
    347F  ILE*     3.4    32.8    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 280 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    276F  MET*     2.9    25.1    +      -       +      +
    277F  MET*     3.6    20.4    -      -       +      +
    279F  ARG*     1.3    76.0    -      -       -      +
    281F  ARG*     1.3    60.2    +      -       +      +
    283F  GLN*     3.4     0.8    +      -       -      +
    284F  GLU*     2.9    31.5    +      -       +      +
    344F  LEU*     3.6    19.6    -      -       +      +
    347F  ILE*     3.5    30.5    -      -       +      -
    348F  GLU*     4.1    17.7    -      -       -      +
    355F  ILE*     5.1     9.2    -      -       +      -
    358F  VAL*     5.5     6.7    -      -       +      -
    359F  LYS*     5.8     2.9    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 281 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    277F  MET*     2.8    51.6    +      -       -      +
    278F  ASP*     4.0    10.5    +      -       -      +
    280F  VAL*     1.3    72.4    -      -       +      +
    282F  THR*     1.3    61.2    +      -       +      +
    284F  GLU*     3.8    10.8    -      -       -      +
    285F  ARG*     2.8    79.3    +      -       +      +
    362F  ASN*     5.1     7.8    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with THR 282 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    278F  ASP*     2.7    31.2    +      -       +      +
    279F  ARG*     2.9    16.6    +      -       -      +
    281F  ARG*     1.3    79.5    -      -       +      +
    283F  GLN*     1.3    57.5    +      -       -      +
    285F  ARG*     3.4     5.0    +      -       -      +
    286F  LEU*     2.9    39.2    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLN 283 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    279F  ARG*     2.9    37.2    +      -       +      +
    282F  THR*     1.3    78.8    +      -       -      +
    284F  GLU*     1.3    56.9    +      -       -      +
    286F  LEU*     3.1    21.4    -      -       +      +
    287F  ILE*     2.9    30.0    +      -       -      +
    340F  ALA*     3.3    18.0    -      -       +      +
    343F  LYS*     3.0    52.4    -      -       +      +
    344F  LEU*     3.4    22.1    +      -       +      +
    347F  ILE*     4.1    11.9    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 284 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    280F  VAL*     2.9    20.7    +      -       +      +
    281F  ARG*     3.8    10.6    -      -       -      +
    283F  GLN*     1.3    76.0    -      -       -      +
    285F  ARG*     1.3    85.7    +      -       -      +
    287F  ILE*     2.9    25.5    -      -       +      +
    288F  MET*     2.9    17.9    +      -       -      +
    306F  PHE*     4.5    17.9    -      -       +      -
    310F  GLU*     4.0    23.8    -      -       +      +
    344F  LEU*     4.0    11.8    -      -       +      +
    359F  LYS*     4.4    19.0    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 285 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    281F  ARG*     2.8    72.8    +      -       +      +
    282F  THR*     3.9     4.7    -      -       -      +
    284F  GLU*     1.3    89.6    +      -       -      +
    286F  LEU*     1.3    57.8    +      -       -      +
    288F  MET*     3.1    24.2    -      -       -      +
    289F  LYS*     2.8    33.2    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 286 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    282F  THR*     2.9    31.3    +      -       -      +
    283F  GLN*     3.1    24.0    -      -       +      +
    285F  ARG*     1.3    74.0    -      -       -      +
    287F  ILE*     1.3    79.4    +      -       -      +
    289F  LYS*     3.6    20.6    -      -       -      +
    290F  LEU*     2.9    39.2    +      -       +      +
    336F  GLU*     4.5     6.5    -      -       -      +
    340F  ALA*     4.1    18.2    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 287 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    283F  GLN      2.9    17.1    +      -       -      +
    284F  GLU*     2.9    32.1    -      -       +      +
    286F  LEU*     1.3    81.2    -      -       +      +
    288F  MET*     1.3    58.9    +      -       +      +
    290F  LEU*     3.1    14.8    -      -       +      +
    291F  CYS*     3.0    33.8    +      -       -      -
    306F  PHE*     4.9    10.1    -      -       +      -
    310F  GLU      6.0     0.7    -      -       -      +
    315F  TRP*     4.4    10.3    -      -       +      -
    337F  VAL*     3.4    44.9    -      -       +      +
    340F  ALA*     4.3     4.5    -      -       +      -
    341F  LEU*     3.8    33.9    -      -       +      +
    344F  LEU*     4.5     6.3    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with MET 288 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    284F  GLU*     2.9    25.2    +      -       -      +
    285F  ARG*     3.1    39.5    -      -       -      +
    287F  ILE*     1.3    78.4    -      -       -      +
    289F  LYS*     1.3    56.6    +      -       -      +
    291F  CYS*     4.3     3.1    -      -       -      -
    292F  VAL*     2.9    37.8    +      -       +      +
    299F  LYS*     4.5    17.0    -      -       -      +
    302F  PHE*     3.4    40.4    -      -       +      -
    306F  PHE*     4.5    10.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with LYS 289 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    285F  ARG*     2.8    18.2    +      -       -      +
    286F  LEU*     3.6    20.2    -      -       +      +
    288F  MET*     1.3    74.0    -      -       -      +
    290F  LEU*     1.3    69.7    +      -       +      +
    293F  GLU*     2.4    54.8    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 290 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    286F  LEU*     2.9    27.9    +      -       +      +
    287F  ILE*     3.1    27.4    -      -       +      +
    289F  LYS*     1.3    74.3    -      -       +      +
    291F  CYS*     1.3    74.5    +      -       -      +
    293F  GLU*     5.1     1.1    -      -       -      -
    294F  GLN*     2.9    39.7    +      -       +      +
    295F  CYS*     3.8     3.2    +      -       -      -
    333F  VAL*     4.9    12.3    -      -       +      -
    336F  GLU*     3.1    37.0    -      -       -      +
    337F  VAL*     3.6    33.0    -      -       +      -
    340F  ALA*     5.4     0.4    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with CYS 291 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    287F  ILE*     3.0    27.3    +      -       -      +
    288F  MET*     3.7     7.2    -      -       -      +
    289F  LYS      3.1     0.2    -      -       -      -
    290F  LEU*     1.3    80.5    -      -       -      +
    292F  VAL*     1.3    59.8    +      -       -      +
    295F  CYS*     2.9    47.6    +      -       +      +
    296F  LYS      3.6     0.5    +      -       -      -
    297F  MET*     4.0     6.6    +      -       +      -
    302F  PHE*     4.5    11.2    -      -       +      -
    315F  TRP*     4.6    17.7    -      -       -      -
    316F  PHE*     6.2     0.7    -      -       -      -
    330F  LEU*     6.2     4.0    -      -       -      -
    337F  VAL*     3.7    27.8    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 292 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    288F  MET*     2.9    23.3    +      -       +      +
    291F  CYS*     1.3    72.2    -      -       -      +
    293F  GLU*     1.3    74.0    +      -       -      +
    296F  LYS*     3.3     8.8    +      -       -      -
    297F  MET*     3.3    36.6    +      -       +      +
    299F  LYS*     4.6    18.2    -      -       +      -
    302F  PHE*     3.7    40.8    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 293 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    289F  LYS*     2.4    52.8    +      -       +      +
    290F  LEU*     5.0     1.1    -      -       -      -
    292F  VAL*     1.3    93.6    -      -       +      +
    294F  GLN*     1.3    60.8    +      -       -      +
    296F  LYS*     4.2     3.7    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLN 294 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    290F  LEU*     2.9    25.2    +      -       +      +
    293F  GLU*     1.3    74.3    -      -       -      +
    295F  CYS*     1.3    77.9    +      -       -      +
    296F  LYS*     3.4     2.2    +      -       -      +
    326F  TRP*     5.2     1.7    -      -       -      +
    329F  LYS*     4.9    19.9    +      -       -      +
    332F  ASP*     5.0     5.5    +      -       -      +
    333F  VAL*     4.0    28.8    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with CYS 295 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    290F  LEU*     4.5     2.9    -      -       -      -
    291F  CYS*     2.9    31.4    +      -       +      +
    294F  GLN*     1.3    89.7    -      -       -      +
    296F  LYS*     1.3    62.1    +      -       -      +
    297F  MET*     3.2     1.8    -      -       +      +
    326F  TRP*     2.7    61.2    -      -       +      +
    329F  LYS*     6.5     0.2    -      -       -      -
    330F  LEU*     4.1    33.0    -      -       +      -
    333F  VAL*     5.0     6.7    -      -       -      -
----------------------------------------------------------
 Back to top of page


A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il