Analysis of interatomic Contacts of Structural Units in PDB entry:
117E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 117E entry

There are 2 chains in PDB entry 117E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ILE 282
B
 THR 1001ILE 1282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 117E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 40Right-handed 310
Helix 2
2
A
147 149Right-handed 310
Helix 3
3
A
165 167Right-handed 310
Helix 4
4
A
171 177Right-handed alpha
Helix 5
5
A
181 191Right-handed alpha
Helix 6
6
A
194 196Right-handed 310
Helix 7
7
A
205 207Right-handed 310
Helix 8
8
A
212 230Right-handed alpha
Helix 9
9
A
255 257Right-handed 310
Helix 10
10
A
274 277Right-handed 310
Helix 11
11
B
1171 1177Right-handed 310
Helix 12
12
B
1181 1191Right-handed alpha
Helix 13
13
B
1194 1196Right-handed 310
Helix 14
14
B
1204 1207Right-handed 310
Helix 15
15
B
1212 1230Right-handed alpha
Helix 16
16
B
1255 1260Right-handed 310
Helix 17
17
B
1274 1277Right-handed 310
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There are 6 sheets in PDB entry 117E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
2 9parallel
Strand 3
A
16 21anti-parallel
Strand 4
A
24 26anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
92 96anti-parallel
Strand 4
A
120 123anti-parallel
Strand 5
A
154 159parallel
Strand 6
A
137 143anti-parallel
Strand 7
A
209 211anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
68 70anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1265 1267first strand
Strand 2
B
1002 1009parallel
Strand 3
B
1016 1021anti-parallel
Strand 4
B
1024 1026anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1134 1138first strand
Strand 2
B
1042 1049anti-parallel
Strand 3
B
1092 1096anti-parallel
Strand 4
B
1120 1123anti-parallel
Strand 5
B
1154 1159parallel
Strand 6
B
1137 1143anti-parallel
Strand 7
B
1209 1211anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1057 1059first strand
Strand 2
B
1068 1070anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il