Analysis of interatomic Contacts of Structural Units in PDB entry:
1AGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AGW entry

There are 2 chains in PDB entry 1AGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 464SER 762
B
 SER 461THR 761
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1AGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AC
A
522 538Right-handed alpha
Helix 2
AD
A
569 574Right-handed alpha
Helix 3
AE
A
597 616Right-handed alpha
Helix 4
AEF
A
669 674Right-handed alpha
Helix 5
AF
A
679 694Right-handed alpha
Helix 6
AG
A
706 714Right-handed alpha
Helix 7
AH
A
727 736Right-handed alpha
Helix 8
AI
A
747 760Right-handed alpha
Helix 9
BC
B
522 538Right-handed alpha
Helix 10
BD
B
569 574Right-handed alpha
Helix 11
BE
B
597 616Right-handed alpha
Helix 12
BEF
B
669 674Right-handed alpha
Helix 13
BF
B
679 694Right-handed alpha
Helix 14
BG
B
706 714Right-handed alpha
Helix 15
BH
B
727 736Right-handed alpha
Helix 16
BI
B
747 760Right-handed alpha
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There are 4 sheets in PDB entry 1AGW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 551first strand
Strand 2
A
558 561anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
492 498anti-parallel
Strand 5
A
478 483anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 631first strand
Strand 2
A
637 639anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
547 551first strand
Strand 2
B
558 562anti-parallel
Strand 3
B
508 516anti-parallel
Strand 4
B
490 498anti-parallel
Strand 5
B
478 486anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 631first strand
Strand 2
B
637 639anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il