Analysis of interatomic Contacts of Structural Units in PDB entry:
1AKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AKF entry

There is 1 chain in PDB entry 1AKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 311HIS 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1AKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
311 313Right-handed alpha
Helix 2
H3
A
345 363Right-handed alpha
Helix 3
H4
A
372 382Right-handed alpha
Helix 4
H5
A
383 397Right-handed alpha
Helix 5
H6
A
412 417Right-handed alpha
Helix 6
H7
A
422 435Right-handed alpha
Helix 7
H8
A
442 461Right-handed alpha
Helix 8
H9
A
472 493Right-handed alpha
Helix 9
H10
A
500 520Right-handed alpha
Helix 10
H11
A
521 531Right-handed alpha
Helix 11
H12
A
538 545Right-handed alpha
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There is 1 sheet ( S1) in PDB entry 1AKF.

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
409 411anti-parallel
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