Analysis of interatomic Contacts of Structural Units in PDB entry:
1AKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AKM entry

There are 3 chains in PDB entry 1AKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LYS 333
B
 SER 1LYS 333
C
 SER 1LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1AKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
16 35Right-handed alpha
Helix 3
3
A
56 69Right-handed alpha
Helix 4
4
A
89 99Right-handed alpha
Helix 5
5
A
110 119Right-handed alpha
Helix 6
6
A
134 148Right-handed alpha
Helix 7
7
A
153 155Right-handed 310
Helix 8
8
A
167 179Right-handed alpha
Helix 9
9
A
189 191Right-handed 310
Helix 10
10
A
195 208Right-handed alpha
Helix 11
11
A
218 222Right-handed alpha
Helix 12
12
A
247 253Right-handed alpha
Helix 13
13
A
257 263Right-handed alpha
Helix 14
14
A
283 291Right-handed alpha
Helix 15
15
A
302 305Right-handed alpha
Helix 16
16
A
312 331Right-handed alpha
Helix 17
17
B
11 13Right-handed 310
Helix 18
18
B
16 34Right-handed alpha
Helix 19
19
B
56 68Right-handed alpha
Helix 20
20
B
89 99Right-handed alpha
Helix 21
21
B
110 119Right-handed alpha
Helix 22
22
B
134 147Right-handed alpha
Helix 23
23
B
153 155Right-handed 310
Helix 24
24
B
167 179Right-handed alpha
Helix 25
25
B
189 191Right-handed 310
Helix 26
26
B
195 208Right-handed alpha
Helix 27
27
B
218 222Right-handed alpha
Helix 28
28
B
247 253Right-handed alpha
Helix 29
29
B
257 263Right-handed alpha
Helix 30
30
B
283 291Right-handed alpha
Helix 31
31
B
302 305Right-handed alpha
Helix 32
32
B
312 331Right-handed alpha
Helix 33
33
C
11 13Right-handed 310
Helix 34
34
C
16 34Right-handed alpha
Helix 35
35
C
56 68Right-handed alpha
Helix 36
36
C
89 99Right-handed alpha
Helix 37
37
C
110 119Right-handed alpha
Helix 38
38
C
134 148Right-handed alpha
Helix 39
39
C
153 155Right-handed 310
Helix 40
40
C
167 179Right-handed alpha
Helix 41
41
C
189 191Right-handed 310
Helix 42
42
C
195 208Right-handed alpha
Helix 43
43
C
218 222Right-handed alpha
Helix 44
44
C
247 253Right-handed alpha
Helix 45
45
C
257 263Right-handed alpha
Helix 46
46
C
283 291Right-handed alpha
Helix 47
47
C
302 305Right-handed alpha
Helix 48
48
C
312 331Right-handed alpha
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There are 6 sheets in PDB entry 1AKM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
46 51parallel
Strand 3
A
102 106parallel
Strand 4
A
123 128parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
227 230parallel
Strand 3
A
157 161parallel
Strand 4
A
182 186parallel
Strand 5
A
211 215parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
46 51parallel
Strand 3
B
102 106parallel
Strand 4
B
123 128parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 272first strand
Strand 2
B
227 230parallel
Strand 3
B
157 161parallel
Strand 4
B
182 186parallel
Strand 5
B
211 215parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
46 51parallel
Strand 3
C
102 106parallel
Strand 4
C
123 128parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 272first strand
Strand 2
C
227 230parallel
Strand 3
C
157 161parallel
Strand 4
C
182 186parallel
Strand 5
C
211 215parallel
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