Analysis of interatomic Contacts of Structural Units in PDB entry:
1AMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AMI entry

There is 1 chain in PDB entry 1AMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 2LYS 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1AMI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H1
A
18 33Right-handed alpha
Helix 2
H2
A
38 45Right-handed alpha
Helix 3
H3
A
50 53Right-handed alpha
Helix 4
H4
A
76 86Right-handed alpha
Helix 5
H5
A
110 119Right-handed alpha
Helix 6
H6
A
121 134Right-handed alpha
Helix 7
H7
A
147 152Right-handed alpha
Helix 8
H8
A
166 174Right-handed 310
Helix 9
H9
A
183 191Right-handed alpha
Helix 10
H10
A
217 228Right-handed alpha
Helix 11
H11
A
230 234Right-handed 310
Helix 12
H12
A
243 247Right-handed 310
Helix 13
H13
A
250 263Right-handed alpha
Helix 14
H14
A
274 282Right-handed alpha
Helix 15
H15
A
286 298Right-handed alpha
Helix 16
H16
A
336 344Right-handed alpha
Helix 17
H17
A
363 378Right-handed alpha
Helix 18
H18
A
394 403Right-handed alpha
Helix 19
H19
A
405 412Right-handed alpha
Helix 20
H20
A
423 425Right-handed 310
Helix 21
H21
A
466 475Right-handed alpha
Helix 22
H22
A
567 570Right-handed alpha
Helix 23
H23
A
575 579Right-handed 310
Helix 24
H24
A
583 589Right-handed alpha
Helix 25
H25
A
616 625Right-handed alpha
Helix 26
H26
A
645 654Right-handed alpha
Helix 27
H27
A
666 675Right-handed alpha
Helix 28
H28
A
686 691Right-handed alpha
Helix 29
H29
A
733 741Right-handed alpha
Helix 30
H30
A
744 751Right-handed alpha
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There are 6 sheets in PDB entry 1AMI. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 64first strand
Strand 2
A
194 199anti-parallel
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There are 6 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
176 181first strand
Strand 2
A
159 163parallel
Strand 3
A
67 73parallel
Strand 4
A
94 98parallel
Strand 5
A
136 139parallel
Strand 6
A
516 518anti-parallel
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There are 4 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
266 270first strand
Strand 2
A
235 243parallel
Strand 3
A
201 209parallel
Strand 4
A
309 315parallel
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There are 7 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
330 333first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
459 464parallel
Strand 4
A
439 444parallel
Strand 5
A
351 357parallel
Strand 6
A
386 390parallel
Strand 7
A
415 417parallel
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There are 4 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
552 555first strand
Strand 2
A
695 700anti-parallel
Strand 3
A
710 717anti-parallel
Strand 4
A
721 728anti-parallel
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There are 5 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
556 561first strand
Strand 2
A
630 635parallel
Strand 3
A
657 662parallel
Strand 4
A
677 682parallel
Strand 5
A
727 728parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il