Analysis of interatomic Contacts of Structural Units in PDB entry:
1AQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1AQJ entry

There are 2 chains in PDB entry 1AQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 21THR 413
B
VAL 21THR 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1AQJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
25 32Right-handed alpha
Helix 2
2
A
52 61Right-handed alpha
Helix 3
3
A
125 132Right-handed alpha
Helix 4
4
A
142 153Right-handed alpha
Helix 5
5
A
166 170Right-handed 310
Helix 6
6
A
172 184Right-handed 310
Helix 7
7
A
248 255Right-handed alpha
Helix 8
8
A
260 262Right-handed 310
Helix 9
9
A
272 277Right-handed alpha
Helix 10
10
A
295 297Right-handed 310
Helix 11
11
A
316 321Right-handed 310
Helix 12
12
A
324 327Right-handed 310
Helix 13
13
A
368 375Right-handed alpha
Helix 14
14
A
378 388Right-handed alpha
Helix 15
15
A
397 400Right-handed alpha
Helix 16
16
B
25 34Right-handed alpha
Helix 17
17
B
52 61Right-handed alpha
Helix 18
18
B
124 132Right-handed alpha
Helix 19
19
B
142 152Right-handed alpha
Helix 20
20
B
166 169Right-handed 310
Helix 21
21
B
172 184Right-handed 310
Helix 22
22
B
248 255Right-handed alpha
Helix 23
23
B
260 263Right-handed alpha
Helix 24
24
B
272 277Right-handed alpha
Helix 25
25
B
316 321Right-handed 310
Helix 26
26
B
324 327Right-handed 310
Helix 27
27
B
368 375Right-handed alpha
Helix 28
28
B
378 388Right-handed alpha
Helix 29
29
B
397 401Right-handed alpha
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There are 8 sheets in PDB entry 1AQJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 235first strand
Strand 2
A
215 222anti-parallel
Strand 3
A
186 193parallel
Strand 4
A
203 209anti-parallel
Strand 5
A
159 165anti-parallel
Strand 6
A
101 104parallel
Strand 7
A
42 46parallel
Strand 8
A
66 71parallel
Strand 9
A
84 87parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
264 268first strand
Strand 2
A
356 360anti-parallel
Strand 3
A
330 333anti-parallel
Strand 4
A
343 346anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
289 291first strand
Strand 2
A
313 315anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
364 366first strand
Strand 2
A
410 412anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
226 234first strand
Strand 2
B
214 223anti-parallel
Strand 3
B
186 193parallel
Strand 4
B
203 209anti-parallel
Strand 5
B
159 165anti-parallel
Strand 6
B
101 104parallel
Strand 7
B
42 46parallel
Strand 8
B
66 71parallel
Strand 9
B
83 87parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
264 268first strand
Strand 2
B
356 360anti-parallel
Strand 3
B
330 333anti-parallel
Strand 4
B
343 346anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
289 291first strand
Strand 2
B
313 315anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
364 366first strand
Strand 2
B
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il