Analysis of interatomic Contacts of Structural Units in PDB entry:
1ATG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ATG entry

There is 1 chain in PDB entry 1ATG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2GLN 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1ATG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed 310
Helix 2
2
A
37 45Right-handed alpha
Helix 3
3
A
59 66Right-handed alpha
Helix 4
4
A
98 101Right-handed 310
Helix 5
5
A
117 129Right-handed alpha
Helix 6
6
A
132 137Right-handed alpha
Helix 7
7
A
147 155Right-handed alpha
Helix 8
8
A
166 168Right-handed 310
Helix 9
9
A
204 215Right-handed alpha
Helix 10
10
A
217 225Right-handed alpha
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There are 3 sheets in PDB entry 1ATG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
3 8parallel
Strand 3
A
52 54parallel
Strand 4
A
192 197anti-parallel
Strand 5
A
76 80anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
179 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 111first strand
Strand 2
A
141 144parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il