Analysis of interatomic Contacts of Structural Units in PDB entry:
1B0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B0J entry

There is 1 chain in PDB entry 1B0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2LYS 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1B0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
73 87Right-handed alpha
Helix 4
4
A
108 120Right-handed alpha
Helix 5
5
A
120 135Right-handed alpha
Helix 6
6
A
145 154Right-handed alpha
Helix 7
7
A
167 175Right-handed 310
Helix 8
8
A
182 191Right-handed alpha
Helix 9
9
A
216 229Right-handed alpha
Helix 10
10
A
242 248Right-handed 310
Helix 11
11
A
249 259Right-handed alpha
Helix 12
12
A
260 264Right-handed 310
Helix 13
13
A
273 283Right-handed alpha
Helix 14
14
A
285 296Right-handed alpha
Helix 15
15
A
297 299Right-handed 310
Helix 16
16
A
334 345Right-handed alpha
Helix 17
17
A
362 378Right-handed alpha
Helix 18
18
A
393 403Right-handed alpha
Helix 19
19
A
404 412Right-handed alpha
Helix 20
20
A
421 426Right-handed 310
Helix 21
21
A
465 476Right-handed alpha
Helix 22
22
A
566 571Right-handed alpha
Helix 23
23
A
573 580Right-handed 310
Helix 24
24
A
582 587Right-handed alpha
Helix 25
25
A
588 590Right-handed 310
Helix 26
26
A
615 626Right-handed alpha
Helix 27
27
A
645 654Right-handed alpha
Helix 28
28
A
665 675Right-handed alpha
Helix 29
29
A
684 691Right-handed 310
Helix 30
30
A
732 742Right-handed alpha
Helix 31
31
A
743 752Right-handed alpha
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There are 10 sheets in PDB entry 1B0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 15anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
195 198anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
160 163parallel
Strand 3
A
68 72parallel
Strand 4
A
95 98parallel
Strand 5
A
137 139parallel
Strand 6
A
517 518anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
236 241parallel
Strand 3
A
201 208parallel
Strand 4
A
309 314parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
331 333anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 416first strand
Strand 2
A
386 389parallel
Strand 3
A
350 355parallel
Strand 4
A
439 443parallel
Strand 5
A
459 463parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
494 496anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 560first strand
Strand 2
A
630 634parallel
Strand 3
A
656 661parallel
Strand 4
A
678 682parallel
Strand 5
A
722 728anti-parallel
Strand 6
A
711 716anti-parallel
Strand 7
A
696 700anti-parallel
Strand 8
A
552 560anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
601 602anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 606first strand
Strand 2
A
613 614anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il