Analysis of interatomic Contacts of Structural Units in PDB entry:
1B0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B0P entry

There are 2 chains in PDB entry 1B0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 2LYS 1232
B
GLY 2LYS 1232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 1B0P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
64 76Right-handed alpha
Helix 4
4
A
87 102Right-handed alpha
Helix 5
5
A
128 133Right-handed alpha
Helix 6
6
A
146 163Right-handed alpha
Helix 7
7
A
188 194Right-handed alpha
Helix 8
8
A
197 206Right-handed alpha
Helix 9
9
A
222 254Right-handed alpha
Helix 10
10
A
278 293Right-handed 310
Helix 11
11
A
310 315Right-handed alpha
Helix 12
12
A
339 351Right-handed alpha
Helix 13
13
A
365 367Right-handed 310
Helix 14
14
A
372 383Right-handed alpha
Helix 15
15
A
430 444Right-handed alpha
Helix 16
16
A
492 495Right-handed 310
Helix 17
17
A
519 525Right-handed alpha
Helix 18
18
A
528 536Right-handed alpha
Helix 19
19
A
546 552Right-handed alpha
Helix 20
20
A
560 570Right-handed alpha
Helix 21
21
A
576 589Right-handed alpha
Helix 22
22
A
598 612Right-handed alpha
Helix 23
23
A
620 624Right-handed 310
Helix 24
24
A
637 641Right-handed alpha
Helix 25
25
A
643 647Right-handed alpha
Helix 26
26
A
651 653Right-handed 310
Helix 27
27
A
656 658Right-handed 310
Helix 28
28
A
669 672Right-handed 310
Helix 29
29
A
686 688Right-handed 310
Helix 30
30
A
694 698Right-handed alpha
Helix 31
31
A
711 713Right-handed 310
Helix 32
32
A
750 754Right-handed alpha
Helix 33
33
A
767 783Right-handed alpha
Helix 34
34
A
796 801Right-handed alpha
Helix 35
35
A
818 831Right-handed alpha
Helix 36
36
A
840 846Right-handed alpha
Helix 37
37
A
872 899Right-handed alpha
Helix 38
38
A
904 915Right-handed alpha
Helix 39
39
A
922 933Right-handed alpha
Helix 40
40
A
941 951Right-handed alpha
Helix 41
41
A
963 967Right-handed alpha
Helix 42
42
A
971 979Right-handed alpha
Helix 43
43
A
1025 1032Right-handed alpha
Helix 44
44
A
1046 1058Right-handed alpha
Helix 45
45
A
1072 1074Right-handed 310
Helix 46
46
A
1080 1092Right-handed 310
Helix 47
47
A
1103 1108Right-handed alpha
Helix 48
48
A
1124 1129Right-handed alpha
Helix 49
49
A
1132 1140Right-handed alpha
Helix 50
50
A
1142 1168Right-handed alpha
Helix 51
51
A
1220 1230Right-handed alpha
Helix 52
52
B
10 21Right-handed alpha
Helix 53
53
B
34 45Right-handed alpha
Helix 54
54
B
64 76Right-handed alpha
Helix 55
55
B
87 102Right-handed alpha
Helix 56
56
B
128 136Right-handed alpha
Helix 57
57
B
146 163Right-handed alpha
Helix 58
58
B
188 194Right-handed alpha
Helix 59
59
B
197 206Right-handed alpha
Helix 60
60
B
210 212Right-handed 310
Helix 61
61
B
225 230Right-handed alpha
Helix 62
62
B
233 254Right-handed alpha
Helix 63
63
B
278 293Right-handed 310
Helix 64
64
B
310 315Right-handed alpha
Helix 65
65
B
339 351Right-handed alpha
Helix 66
66
B
365 367Right-handed 310
Helix 67
67
B
372 383Right-handed alpha
Helix 68
68
B
430 444Right-handed alpha
Helix 69
69
B
492 497Right-handed 310
Helix 70
70
B
519 525Right-handed alpha
Helix 71
71
B
528 536Right-handed alpha
Helix 72
72
B
546 552Right-handed alpha
Helix 73
73
B
560 570Right-handed alpha
Helix 74
74
B
576 589Right-handed alpha
Helix 75
75
B
598 612Right-handed alpha
Helix 76
76
B
620 624Right-handed 310
Helix 77
77
B
637 641Right-handed alpha
Helix 78
78
B
643 647Right-handed alpha
Helix 79
79
B
651 653Right-handed 310
Helix 80
80
B
656 658Right-handed 310
Helix 81
81
B
669 672Right-handed 310
Helix 82
82
B
686 688Right-handed 310
Helix 83
83
B
694 698Right-handed alpha
Helix 84
84
B
711 714Right-handed 310
Helix 85
85
B
750 754Right-handed alpha
Helix 86
86
B
767 783Right-handed alpha
Helix 87
87
B
796 801Right-handed alpha
Helix 88
88
B
818 831Right-handed alpha
Helix 89
89
B
840 846Right-handed alpha
Helix 90
90
B
872 899Right-handed alpha
Helix 91
91
B
904 915Right-handed alpha
Helix 92
92
B
922 933Right-handed alpha
Helix 93
93
B
940 952Right-handed alpha
Helix 94
94
B
963 967Right-handed alpha
Helix 95
95
B
971 979Right-handed alpha
Helix 96
96
B
1025 1032Right-handed alpha
Helix 97
97
B
1046 1058Right-handed alpha
Helix 98
98
B
1072 1074Right-handed 310
Helix 99
99
B
1080 1092Right-handed 310
Helix 100
100
B
1103 1108Right-handed alpha
Helix 101
101
B
1124 1129Right-handed alpha
Helix 102
102
B
1132 1140Right-handed alpha
Helix 103
103
B
1142 1167Right-handed alpha
Helix 104
104
B
1220 1230Right-handed alpha
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There are 18 sheets in PDB entry 1B0P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 9first strand
Strand 2
A
180 186anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 27first strand
Strand 2
A
57 60parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 85first strand
Strand 2
A
108 113parallel
Strand 3
A
167 172parallel
Strand 4
A
139 142parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
261 265first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
271 275parallel
Strand 4
A
323 328parallel
Strand 5
A
358 363parallel
Strand 6
A
390 392parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
540 544first strand
Strand 2
A
509 513parallel
Strand 3
A
486 489parallel
Strand 4
A
417 425parallel
Strand 5
A
463 471anti-parallel
Strand 6
A
448 454anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
680 684first strand
Strand 2
A
762 766anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
704 710first strand
Strand 2
A
734 740anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
863 866first strand
Strand 2
A
832 836parallel
Strand 3
A
956 962parallel
Strand 4
A
985 990parallel
Strand 5
A
1063 1068parallel
Strand 6
A
1036 1040parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1099 1101first strand
Strand 2
A
1113 1115anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 9first strand
Strand 2
B
180 186anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 27first strand
Strand 2
B
57 60parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
82 85first strand
Strand 2
B
108 113parallel
Strand 3
B
167 172parallel
Strand 4
B
139 142parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
261 265first strand
Strand 2
B
297 302anti-parallel
Strand 3
B
271 275parallel
Strand 4
B
323 328parallel
Strand 5
B
358 362parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
540 544first strand
Strand 2
B
509 513parallel
Strand 3
B
486 489parallel
Strand 4
B
417 425parallel
Strand 5
B
463 471anti-parallel
Strand 6
B
448 454anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
680 684first strand
Strand 2
B
762 766anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
704 710first strand
Strand 2
B
734 740anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
863 866first strand
Strand 2
B
832 836parallel
Strand 3
B
956 962parallel
Strand 4
B
985 990parallel
Strand 5
B
1063 1068parallel
Strand 6
B
1036 1040parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1099 1101first strand
Strand 2
B
1113 1115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il