Analysis of interatomic Contacts of Structural Units in PDB entry:
1B8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1B8H entry

There are 4 chains in PDB entry 1B8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 228
B
 MET 1PHE 228
C
 MET 1PHE 228
D
 LYS 893PHE 903
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1B8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
97 99Right-handed 310
Helix 4
4
A
120 132Right-handed alpha
Helix 5
5
A
184 186Right-handed 310
Helix 6
6
B
5 17Right-handed alpha
Helix 7
7
B
57 66Right-handed alpha
Helix 8
8
B
97 99Right-handed 310
Helix 9
9
B
120 132Right-handed alpha
Helix 10
10
B
184 186Right-handed 310
Helix 11
11
C
5 17Right-handed alpha
Helix 12
12
C
57 66Right-handed alpha
Helix 13
13
C
97 99Right-handed 310
Helix 14
14
C
120 132Right-handed alpha
Helix 15
15
C
184 186Right-handed 310
Helix 16
16
D
897 899Right-handed 310
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There are 12 sheets in PDB entry 1B8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
52 54anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
214 219anti-parallel
Strand 4
A
204 210anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
114 118anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
81 84anti-parallel
Strand 3
A
89 92anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
165 168anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
52 54anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
214 219anti-parallel
Strand 4
B
204 210anti-parallel
Strand 5
B
194 201anti-parallel
Strand 6
B
114 118anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
81 84anti-parallel
Strand 3
B
89 92anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 183first strand
Strand 2
B
137 143anti-parallel
Strand 3
B
146 152anti-parallel
Strand 4
B
165 168anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
52 54anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
38 43anti-parallel
Strand 3
C
214 219anti-parallel
Strand 4
C
204 210anti-parallel
Strand 5
C
194 201anti-parallel
Strand 6
C
114 118anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 75first strand
Strand 2
C
81 84anti-parallel
Strand 3
C
89 92anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 183first strand
Strand 2
C
137 143anti-parallel
Strand 3
C
146 152anti-parallel
Strand 4
C
165 168anti-parallel
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