Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1B98 entry
There are 2 chains in PDB entry 1B98
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLU 13 | THR 127 |
M
|
ARG 11 | ARG 126 |
Back to top of page
There are no helices in PDB entry
1B98
There are
5 sheets in PDB entry 1B98. Click on sheet of
interest to get list of strands forming it:
A,
B,
C,
D,
E,
There are 2
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 19 |
24 | first strand |
Strand 2 |
A
| 56 |
61 | anti-parallel |
Back to list of sheets
Back to top of page
There are 5
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 29 |
31 | first strand |
Strand 2 |
A
| 37 |
40 | anti-parallel |
Strand 3 |
A
| 88 |
102 | anti-parallel |
Strand 4 |
A
| 109 |
123 | anti-parallel |
Strand 5 |
M
| 14 |
15 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
M
| 19 |
24 | first strand |
Strand 2 |
M
| 56 |
61 | anti-parallel |
Back to list of sheets
Back to top of page
There are 4
strands in D sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
M
| 29 |
31 | first strand |
Strand 2 |
M
| 37 |
40 | anti-parallel |
Strand 3 |
M
| 87 |
102 | anti-parallel |
Strand 4 |
M
| 108 |
125 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in E sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
M
| 43 |
44 | first strand |
Strand 2 |
M
| 52 |
53 | anti-parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il