Analysis of interatomic Contacts of Structural Units in PDB entry:
1BJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1BJ4 entry

There is 1 chain in PDB entry 1BJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11LEU 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1BJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
30 47Right-handed alpha
Helix 4
AA4
A
58 66Right-handed alpha
Helix 5
AA5
A
67 71Right-handed 310
Helix 6
AA6
A
86 104Right-handed alpha
Helix 7
AA7
A
119 132Right-handed alpha
Helix 8
AA8
A
143 146Right-handed 310
Helix 9
AA9
A
148 152Right-handed 310
Helix 10
AB1
A
161 167Right-handed alpha
Helix 11
AB2
A
182 194Right-handed alpha
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
A
232 238Right-handed alpha
Helix 14
AB5
A
243 247Right-handed 310
Helix 15
AB6
A
256 260Right-handed 310
Helix 16
AB7
A
287 297Right-handed alpha
Helix 17
AB8
A
305 319Right-handed alpha
Helix 18
AB9
A
321 345Right-handed alpha
Helix 19
AC1
A
364 367Right-handed 310
Helix 20
AC2
A
369 380Right-handed alpha
Helix 21
AC3
A
405 411Right-handed alpha
Helix 22
AC4
A
414 439Right-handed alpha
Helix 23
AC5
A
444 453Right-handed alpha
Helix 24
AC6
A
457 473Right-handed alpha
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There are 5 sheets in PDB entry 1BJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
382 383parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
265 270anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
224 228parallel
Strand 5
A
197 200parallel
Strand 6
A
137 141parallel
Strand 7
A
168 172parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
400 404anti-parallel
Strand 4
A
385 387anti-parallel
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