Analysis of interatomic Contacts of Structural Units in PDB entry:
1C1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1C1D entry

There are 2 chains in PDB entry 1C1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 349
B
 SER 1ALA 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1C1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 7Right-handed alpha
Helix 2
2
A
48 70Right-handed alpha
Helix 3
3
A
86 90Right-handed 310
Helix 4
4
A
91 109Right-handed alpha
Helix 5
5
A
122 133Right-handed alpha
Helix 6
6
A
140 144Right-handed 310
Helix 7
7
A
149 168Right-handed alpha
Helix 8
8
A
184 197Right-handed alpha
Helix 9
9
A
207 217Right-handed alpha
Helix 10
10
A
223 230Right-handed 310
Helix 11
11
A
245 252Right-handed alpha
Helix 12
12
A
267 277Right-handed alpha
Helix 13
13
A
283 288Right-handed alpha
Helix 14
14
A
289 300Right-handed alpha
Helix 15
15
A
304 314Right-handed alpha
Helix 16
16
A
314 330Right-handed alpha
Helix 17
17
A
332 348Right-handed alpha
Helix 18
18
B
1 7Right-handed alpha
Helix 19
19
B
48 70Right-handed alpha
Helix 20
20
B
86 90Right-handed 310
Helix 21
21
B
91 109Right-handed alpha
Helix 22
22
B
122 131Right-handed alpha
Helix 23
23
B
140 144Right-handed 310
Helix 24
24
B
149 168Right-handed alpha
Helix 25
25
B
184 197Right-handed alpha
Helix 26
26
B
207 217Right-handed alpha
Helix 27
27
B
223 230Right-handed 310
Helix 28
28
B
245 252Right-handed alpha
Helix 29
29
B
267 277Right-handed alpha
Helix 30
30
B
283 288Right-handed alpha
Helix 31
31
B
289 300Right-handed alpha
Helix 32
32
B
304 314Right-handed alpha
Helix 33
33
B
314 330Right-handed alpha
Helix 34
34
B
332 345Right-handed alpha
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There are 5 sheets in PDB entry 1C1D. Click on sheet of interest to get list of strands forming it: A, B, C, C1, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
75 82anti-parallel
Strand 4
A
37 44parallel
Strand 5
A
113 117parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
200 204parallel
Strand 3
A
177 181parallel
Strand 4
A
234 237parallel
Strand 5
A
256 257parallel
Strand 6
A
280 281parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
37 38parallel
Strand 5
B
113 114parallel
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There are 4 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
23 31anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
41 44parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
200 204parallel
Strand 3
B
177 181parallel
Strand 4
B
234 237parallel
Strand 5
B
256 257parallel
Strand 6
B
280 281parallel
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