Analysis of interatomic Contacts of Structural Units in PDB entry:
1CC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CC6 entry

There is 1 chain in PDB entry 1CC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1GLU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1CC6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
H1
A
12 23Right-handed alpha
Helix 2
H2
A
36 40Right-handed alpha
Helix 3
H3
A
50 58Right-handed alpha
Helix 4
H4
A
63 68Right-handed alpha
Helix 5
H5
A
88 91Right-handed alpha
Helix 6
H6
A
102 116Right-handed alpha
Helix 7
H7
A
164 167Right-handed alpha
Helix 8
H7A
A
171 173Right-handed 310
Helix 9
H7B
A
231 233Right-handed 310
Helix 10
H8
A
236 246Right-handed alpha
Helix 11
H9
A
249 254Right-handed alpha
Helix 12
H9A
A
285 287Right-handed 310
Helix 13
H9B
A
293 295Right-handed 310
Helix 14
H10
A
298 318Right-handed alpha
Helix 15
HH1
A
322 327Right-handed 310
Helix 16
H11
A
328 350Right-handed alpha
Helix 17
H12
A
358 371Right-handed alpha
Helix 18
H13
A
375 386Right-handed alpha
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There are 5 sheets in PDB entry 1CC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 121first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
154 157parallel
Strand 5
A
281 283parallel
Strand 6
A
277 278anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 87first strand
Strand 2
A
74 79anti-parallel
Strand 3
A
200 203parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
218 225anti-parallel
Strand 6
A
183 190anti-parallel
Strand 7
A
260 267anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2 3first strand
Strand 2
A
146 151parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
125 130anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 182first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
289 290anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
97 99anti-parallel
Strand 3
A
70 72anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il