Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1CFI entry
There are 10 chains in PDB entry 1CFI
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
TYR 1 | LEU 6 |
A
|
PHE 9 | LEU 14 |
A
|
ARG 16 | ARG 16 |
A
|
CYS 18 | MET 19 |
A
|
LYS 22 | PHE 25 |
A
|
ALA 28 | ARG 29 |
A
|
VAL 31 | PHE 32 |
A
|
ASN 34 | THR 35 |
A
|
ARG 37 | THR 39 |
A
|
PHE 41 | ASP 47 |
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There are 5
helices in PDB entry 1CFI. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 7 |
8 | Right-handed alpha |
Helix 2 |
2 | A
| 14 |
17 | Right-handed alpha |
Helix 3 |
3 | A
| 18 |
20 | Right-handed alpha |
Helix 4 |
4 | A
| 25 |
32 | Right-handed alpha |
Helix 5 |
5 | A
| 35 |
46 | Right-handed alpha |
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There are no sheets in PDB entry
1CFI
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il