Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJK entry

There are 3 chains in PDB entry 1CJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 377LEU 565
B
 LEU 877THR 1077
C
 ALA 39LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1CJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
400 405Right-handed alpha
Helix 2
2
A
409 429Right-handed alpha
Helix 3
3
A
455 477Right-handed alpha
Helix 4
4
A
509 519Right-handed alpha
Helix 5
5
A
530 535Right-handed alpha
Helix 6
6
A
547 549Right-handed 310
Helix 7
7
A
552 556Right-handed alpha
Helix 8
8
B
893 898Right-handed 310
Helix 9
9
B
909 927Right-handed alpha
Helix 10
10
B
929 931Right-handed 310
Helix 11
11
B
966 990Right-handed 310
Helix 12
12
B
1022 1032Right-handed alpha
Helix 13
13
B
1043 1051Right-handed alpha
Helix 14
14
C
53 64Right-handed alpha
Helix 15
15
C
88 109Right-handed alpha
Helix 16
16
C
122 133Right-handed 310
Helix 17
17
C
144 155Right-handed alpha
Helix 18
18
C
157 164Right-handed alpha
Helix 19
19
C
166 168Right-handed 310
Helix 20
20
C
175 186Right-handed alpha
Helix 21
21
C
194 199Right-handed alpha
Helix 22
22
C
228 237Right-handed 310
Helix 23
23
C
265 277Right-handed alpha
Helix 24
24
C
294 303Right-handed alpha
Helix 25
25
C
308 310Right-handed 310
Helix 26
26
C
313 317Right-handed 310
Helix 27
27
C
332 350Right-handed alpha
Helix 28
28
C
369 385Right-handed alpha
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There are 5 sheets in PDB entry 1CJK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 387first strand
Strand 2
A
492 496anti-parallel
Strand 3
A
505 507anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 438first strand
Strand 2
A
441 446anti-parallel
Strand 3
A
390 397anti-parallel
Strand 4
A
483 490anti-parallel
Strand 5
A
526 529parallel
Strand 6
A
561 564anti-parallel
Strand 7
A
542 544anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
934 940first strand
Strand 2
B
943 948anti-parallel
Strand 3
B
885 890anti-parallel
Strand 4
B
998 1003anti-parallel
Strand 5
B
1039 1042parallel
Strand 6
B
1068 1075anti-parallel
Strand 7
B
1056 1064anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1006 1008first strand
Strand 2
B
1018 1020anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
359 363first strand
Strand 2
C
287 292parallel
Strand 3
C
243 249parallel
Strand 4
C
40 46parallel
Strand 5
C
218 223parallel
Strand 6
C
208 213anti-parallel
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