Analysis of interatomic Contacts of Structural Units in PDB entry:
1CJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CJL entry

There is 1 chain in PDB entry 1CJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5VAL 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1CJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
25 50Right-handed alpha
Helix 3
3
A
68 74Right-handed alpha
Helix 4
4
A
7 9Right-handed 310
Helix 5
5
A
25 42Right-handed alpha
Helix 6
6
A
50 60Right-handed alpha
Helix 7
7
A
64 66Right-handed 310
Helix 8
8
A
70 80Right-handed alpha
Helix 9
9
A
102 104Right-handed 310
Helix 10
10
A
119 129Right-handed alpha
Helix 11
11
A
141 144Right-handed alpha
Helix 12
12
A
208 210Right-handed 310
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There are 3 sheets in PDB entry 1CJL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
216 219anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
163 172anti-parallel
Strand 3
A
181 186anti-parallel
Strand 4
A
198 202anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
146 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il