Analysis of interatomic Contacts of Structural Units in PDB entry:
1CVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1CVI entry

There are 4 chains in PDB entry 1CVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1001THR 1342
B
 LYS 2001THR 2342
C
 LYS 3001THR 3342
D
 LYS 4001THR 4342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 1CVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1027 1031Right-handed 310
Helix 2
2
A
1039 1057Right-handed alpha
Helix 3
3
A
1077 1092Right-handed alpha
Helix 4
4
A
1095 1099Right-handed 310
Helix 5
5
A
1115 1119Right-handed 310
Helix 6
6
A
1129 1142Right-handed alpha
Helix 7
7
A
1142 1150Right-handed alpha
Helix 8
8
A
1152 1164Right-handed alpha
Helix 9
9
A
1169 1177Right-handed alpha
Helix 10
10
A
1177 1187Right-handed alpha
Helix 11
11
A
1196 1216Right-handed alpha
Helix 12
12
A
1219 1225Right-handed alpha
Helix 13
13
A
1228 1245Right-handed alpha
Helix 14
14
A
1257 1268Right-handed alpha
Helix 15
15
A
1321 1329Right-handed alpha
Helix 16
16
A
1330 1332Right-handed 310
Helix 17
17
A
1335 1341Right-handed alpha
Helix 18
18
B
2027 2031Right-handed 310
Helix 19
19
B
2039 2057Right-handed alpha
Helix 20
20
B
2077 2092Right-handed alpha
Helix 21
21
B
2095 2099Right-handed 310
Helix 22
22
B
2115 2119Right-handed 310
Helix 23
23
B
2129 2142Right-handed alpha
Helix 24
24
B
2142 2150Right-handed alpha
Helix 25
25
B
2152 2164Right-handed alpha
Helix 26
26
B
2169 2177Right-handed alpha
Helix 27
27
B
2177 2187Right-handed alpha
Helix 28
28
B
2196 2216Right-handed alpha
Helix 29
29
B
2219 2225Right-handed alpha
Helix 30
30
B
2228 2245Right-handed alpha
Helix 31
31
B
2257 2269Right-handed alpha
Helix 32
32
B
2321 2329Right-handed alpha
Helix 33
33
B
2335 2341Right-handed alpha
Helix 34
34
C
3027 3031Right-handed 310
Helix 35
35
C
3039 3057Right-handed alpha
Helix 36
36
C
3077 3092Right-handed alpha
Helix 37
37
C
3095 3099Right-handed 310
Helix 38
38
C
3115 3119Right-handed 310
Helix 39
39
C
3129 3142Right-handed alpha
Helix 40
40
C
3142 3150Right-handed alpha
Helix 41
41
C
3152 3164Right-handed alpha
Helix 42
42
C
3169 3177Right-handed alpha
Helix 43
43
C
3177 3187Right-handed alpha
Helix 44
44
C
3196 3216Right-handed alpha
Helix 45
45
C
3219 3225Right-handed alpha
Helix 46
46
C
3228 3245Right-handed alpha
Helix 47
47
C
3257 3268Right-handed alpha
Helix 48
48
C
3321 3329Right-handed alpha
Helix 49
49
C
3335 3341Right-handed alpha
Helix 50
50
D
4027 4031Right-handed 310
Helix 51
51
D
4039 4057Right-handed alpha
Helix 52
52
D
4077 4092Right-handed alpha
Helix 53
53
D
4095 4099Right-handed 310
Helix 54
54
D
4129 4142Right-handed alpha
Helix 55
55
D
4142 4150Right-handed alpha
Helix 56
56
D
4152 4164Right-handed alpha
Helix 57
57
D
4169 4177Right-handed alpha
Helix 58
58
D
4177 4187Right-handed alpha
Helix 59
59
D
4196 4216Right-handed alpha
Helix 60
60
D
4219 4225Right-handed alpha
Helix 61
61
D
4228 4245Right-handed alpha
Helix 62
62
D
4257 4268Right-handed alpha
Helix 63
63
D
4321 4329Right-handed alpha
Helix 64
64
D
4330 4332Right-handed 310
Helix 65
65
D
4335 4341Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1CVI. Click on sheet of interest to get list of strands forming it: A, A1, B, B1, C, C1, D, D1,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1114first strand
Strand 2
A
1070 1075parallel
Strand 3
A
1251 1256parallel
Strand 4
A
1002 1011parallel
Strand 5
A
1281 1289anti-parallel
Strand 6
A
1292 1300anti-parallel
Strand 7
A
1308 1309anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1114first strand
Strand 2
A
1070 1075parallel
Strand 3
A
1251 1256parallel
Strand 4
A
1002 1011parallel
Strand 5
A
1281 1289anti-parallel
Strand 6
A
1292 1300anti-parallel
Strand 7
A
1318 1320anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2112 2114first strand
Strand 2
B
2070 2075parallel
Strand 3
B
2251 2256parallel
Strand 4
B
2002 2011parallel
Strand 5
B
2281 2289anti-parallel
Strand 6
B
2292 2300anti-parallel
Strand 7
B
2308 2309anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2112 2114first strand
Strand 2
B
2070 2075parallel
Strand 3
B
2251 2256parallel
Strand 4
B
2002 2011parallel
Strand 5
B
2281 2289anti-parallel
Strand 6
B
2292 2300anti-parallel
Strand 7
B
2318 2320anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3112 3114first strand
Strand 2
C
3070 3075parallel
Strand 3
C
3251 3256parallel
Strand 4
C
3002 3011parallel
Strand 5
C
3281 3289anti-parallel
Strand 6
C
3292 3300anti-parallel
Strand 7
C
3308 3309anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3112 3114first strand
Strand 2
C
3070 3075parallel
Strand 3
C
3251 3256parallel
Strand 4
C
3002 3011parallel
Strand 5
C
3281 3289anti-parallel
Strand 6
C
3292 3300anti-parallel
Strand 7
C
3318 3320anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4112 4114first strand
Strand 2
D
4070 4075parallel
Strand 3
D
4251 4256parallel
Strand 4
D
4002 4011parallel
Strand 5
D
4281 4289anti-parallel
Strand 6
D
4292 4300anti-parallel
Strand 7
D
4308 4309anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4112 4114first strand
Strand 2
D
4070 4075parallel
Strand 3
D
4251 4256parallel
Strand 4
D
4002 4011parallel
Strand 5
D
4281 4289anti-parallel
Strand 6
D
4292 4300anti-parallel
Strand 7
D
4318 4320anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il