Analysis of interatomic Contacts of Structural Units in PDB entry:
1D09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D09 entry

There are 4 chains in PDB entry 1D09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 310
B
 MET 1ASN 153
C
 ALA 1LEU 310
D
 MET 1ASN 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 1D09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 33Right-handed alpha
Helix 2
2
A
53 66Right-handed alpha
Helix 3
3
A
75 78Right-handed 310
Helix 4
4
A
79 84Right-handed alpha
Helix 5
5
A
87 96Right-handed alpha
Helix 6
6
A
110 115Right-handed alpha
Helix 7
7
A
134 150Right-handed alpha
Helix 8
8
A
166 177Right-handed alpha
Helix 9
9
A
189 193Right-handed 310
Helix 10
10
A
195 205Right-handed alpha
Helix 11
11
A
214 218Right-handed 310
Helix 12
12
A
236 243Right-handed 310
Helix 13
13
A
250 254Right-handed 310
Helix 14
14
A
274 280Right-handed 310
Helix 15
15
A
284 291Right-handed alpha
Helix 16
16
A
291 305Right-handed alpha
Helix 17
17
B
25 33Right-handed alpha
Helix 18
18
B
67 73Right-handed alpha
Helix 19
19
B
115 118Right-handed 310
Helix 20
20
C
11 15Right-handed 310
Helix 21
21
C
16 31Right-handed alpha
Helix 22
22
C
53 66Right-handed alpha
Helix 23
23
C
75 78Right-handed 310
Helix 24
24
C
79 84Right-handed alpha
Helix 25
25
C
87 96Right-handed alpha
Helix 26
26
C
110 119Right-handed alpha
Helix 27
27
C
134 150Right-handed alpha
Helix 28
28
C
166 176Right-handed alpha
Helix 29
29
C
189 193Right-handed 310
Helix 30
30
C
195 206Right-handed alpha
Helix 31
31
C
236 244Right-handed 310
Helix 32
32
C
250 255Right-handed 310
Helix 33
33
C
284 305Right-handed alpha
Helix 34
34
D
25 32Right-handed alpha
Helix 35
35
D
51 53Right-handed 310
Helix 36
36
D
69 78Right-handed alpha
Helix 37
37
D
147 151Right-handed alpha
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There are 8 sheets in PDB entry 1D09. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
101 106parallel
Strand 4
A
124 129parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
183 187parallel
Strand 3
A
156 160parallel
Strand 4
A
224 227parallel
Strand 5
A
262 264parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
15 21anti-parallel
Strand 4
B
57 62anti-parallel
Strand 5
B
42 45anti-parallel
Strand 6
D
42 50first strand
Strand 7
D
54 62anti-parallel
Strand 8
D
15 21anti-parallel
Strand 9
D
82 86anti-parallel
Strand 10
D
91 95anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
144 146anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
151 152anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
43 48parallel
Strand 3
C
101 106parallel
Strand 4
C
124 129parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 211first strand
Strand 2
C
183 187parallel
Strand 3
C
156 160parallel
Strand 4
C
224 227parallel
Strand 5
C
262 264parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
124 129anti-parallel
Strand 3
D
134 138anti-parallel
Strand 4
D
144 146anti-parallel
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