Analysis of interatomic Contacts of Structural Units in PDB entry:
1D0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D0N entry

There are 2 chains in PDB entry 1D0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 27ALA 755
B
 VAL 27ALA 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1D0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
55 59Right-handed 310
Helix 3
3
A
94 112Right-handed alpha
Helix 4
4
A
127 133Right-handed alpha
Helix 5
5
A
179 183Right-handed 310
Helix 6
6
A
206 224Right-handed alpha
Helix 7
7
A
225 228Right-handed 310
Helix 8
8
A
240 248Right-handed alpha
Helix 9
9
A
257 261Right-handed 310
Helix 10
10
A
295 299Right-handed 310
Helix 11
11
A
310 312Right-handed 310
Helix 12
12
A
324 329Right-handed alpha
Helix 13
13
A
330 342Right-handed alpha
Helix 14
14
A
359 364Right-handed alpha
Helix 15
15
A
384 388Right-handed 310
Helix 16
16
A
399 402Right-handed 310
Helix 17
17
A
403 411Right-handed alpha
Helix 18
18
A
434 438Right-handed 310
Helix 19
19
A
472 489Right-handed alpha
Helix 20
20
A
505 510Right-handed alpha
Helix 21
21
A
557 561Right-handed 310
Helix 22
22
A
584 599Right-handed alpha
Helix 23
23
A
611 617Right-handed alpha
Helix 24
24
A
633 638Right-handed alpha
Helix 25
25
A
662 666Right-handed 310
Helix 26
26
A
689 694Right-handed alpha
Helix 27
27
A
695 707Right-handed alpha
Helix 28
28
A
726 731Right-handed alpha
Helix 29
29
A
737 742Right-handed 310
Helix 30
30
A
744 754Right-handed alpha
Helix 31
31
B
55 59Right-handed 310
Helix 32
32
B
94 112Right-handed alpha
Helix 33
33
B
127 132Right-handed alpha
Helix 34
34
B
144 148Right-handed 310
Helix 35
35
B
179 183Right-handed 310
Helix 36
36
B
206 224Right-handed alpha
Helix 37
37
B
225 228Right-handed 310
Helix 38
38
B
240 248Right-handed alpha
Helix 39
39
B
297 299Right-handed 310
Helix 40
40
B
310 312Right-handed 310
Helix 41
41
B
324 329Right-handed alpha
Helix 42
42
B
330 342Right-handed alpha
Helix 43
43
B
359 364Right-handed alpha
Helix 44
44
B
384 388Right-handed 310
Helix 45
45
B
396 401Right-handed alpha
Helix 46
46
B
403 411Right-handed alpha
Helix 47
47
B
434 438Right-handed 310
Helix 48
48
B
472 490Right-handed alpha
Helix 49
49
B
505 510Right-handed alpha
Helix 50
50
B
511 513Right-handed 310
Helix 51
51
B
557 561Right-handed 310
Helix 52
52
B
584 599Right-handed alpha
Helix 53
53
B
611 618Right-handed alpha
Helix 54
54
B
633 638Right-handed alpha
Helix 55
55
B
662 666Right-handed 310
Helix 56
56
B
689 695Right-handed alpha
Helix 57
57
B
695 707Right-handed alpha
Helix 58
58
B
726 731Right-handed alpha
Helix 59
59
B
744 754Right-handed alpha
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There are 10 sheets in PDB entry 1D0N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
81 89anti-parallel
Strand 5
A
117 122parallel
Strand 6
A
349 354anti-parallel
Strand 7
A
314 319parallel
Strand 8
A
304 309anti-parallel
Strand 9
A
272 277anti-parallel
Strand 10
A
284 289anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
138 141parallel
Strand 3
A
172 176parallel
Strand 4
A
161 166anti-parallel
Strand 5
A
188 192anti-parallel
Strand 6
A
196 201anti-parallel
Strand 7
A
230 235parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 432first strand
Strand 2
A
420 426anti-parallel
Strand 3
A
446 455anti-parallel
Strand 4
A
458 467anti-parallel
Strand 5
A
495 500parallel
Strand 6
A
717 721anti-parallel
Strand 7
A
680 684parallel
Strand 8
A
671 675anti-parallel
Strand 9
A
641 646anti-parallel
Strand 10
A
653 656anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
517 520parallel
Strand 3
A
549 554parallel
Strand 4
A
537 543anti-parallel
Strand 5
A
566 570anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
605 606parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
67 75anti-parallel
Strand 4
B
81 89anti-parallel
Strand 5
B
117 122parallel
Strand 6
B
349 354anti-parallel
Strand 7
B
314 319parallel
Strand 8
B
304 309anti-parallel
Strand 9
B
272 277anti-parallel
Strand 10
B
284 289anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
138 141parallel
Strand 3
B
172 176parallel
Strand 4
B
161 166anti-parallel
Strand 5
B
188 192anti-parallel
Strand 6
B
196 201anti-parallel
Strand 7
B
230 235parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 295first strand
Strand 2
B
366 367parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 432first strand
Strand 2
B
420 426anti-parallel
Strand 3
B
446 455anti-parallel
Strand 4
B
458 467anti-parallel
Strand 5
B
495 500parallel
Strand 6
B
717 721anti-parallel
Strand 7
B
680 684parallel
Strand 8
B
671 675anti-parallel
Strand 9
B
641 646anti-parallel
Strand 10
B
653 656anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 442first strand
Strand 2
B
517 520parallel
Strand 3
B
549 554parallel
Strand 4
B
537 543anti-parallel
Strand 5
B
566 570anti-parallel
Strand 6
B
575 579anti-parallel
Strand 7
B
602 606parallel
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