Analysis of interatomic Contacts of Structural Units in PDB entry:
1D2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D2R entry

There are 6 chains in PDB entry 1D2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 326
B
 MET 1ARG 326
C
 MET 1ARG 326
D
 MET 1ARG 326
E
 MET 1ARG 326
F
 MET 1ARG 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 96 helices in PDB entry 1D2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
22 33Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
50 69Right-handed alpha
Helix 5
5
A
81 83Right-handed 310
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
98 104Right-handed alpha
Helix 8
8
A
105 112Right-handed alpha
Helix 9
9
A
120 135Right-handed alpha
Helix 10
10
A
147 166Right-handed alpha
Helix 11
11
A
199 203Right-handed 310
Helix 12
12
A
209 220Right-handed alpha
Helix 13
13
A
235 250Right-handed alpha
Helix 14
14
A
252 260Right-handed alpha
Helix 15
15
A
264 292Right-handed alpha
Helix 16
16
A
294 323Right-handed alpha
Helix 17
17
B
15 22Right-handed alpha
Helix 18
18
B
22 33Right-handed alpha
Helix 19
19
B
43 47Right-handed 310
Helix 20
20
B
50 69Right-handed alpha
Helix 21
21
B
81 83Right-handed 310
Helix 22
22
B
84 95Right-handed alpha
Helix 23
23
B
98 104Right-handed alpha
Helix 24
24
B
105 112Right-handed alpha
Helix 25
25
B
120 135Right-handed alpha
Helix 26
26
B
147 166Right-handed alpha
Helix 27
27
B
199 203Right-handed 310
Helix 28
28
B
209 220Right-handed alpha
Helix 29
29
B
235 250Right-handed alpha
Helix 30
30
B
252 260Right-handed alpha
Helix 31
31
B
264 292Right-handed alpha
Helix 32
32
B
294 323Right-handed alpha
Helix 33
33
C
15 22Right-handed alpha
Helix 34
34
C
22 33Right-handed alpha
Helix 35
35
C
40 45Right-handed alpha
Helix 36
36
C
50 69Right-handed alpha
Helix 37
37
C
81 83Right-handed 310
Helix 38
38
C
84 95Right-handed alpha
Helix 39
39
C
98 104Right-handed alpha
Helix 40
40
C
105 112Right-handed alpha
Helix 41
41
C
120 135Right-handed alpha
Helix 42
42
C
147 166Right-handed alpha
Helix 43
43
C
199 203Right-handed 310
Helix 44
44
C
209 220Right-handed alpha
Helix 45
45
C
235 250Right-handed alpha
Helix 46
46
C
252 260Right-handed alpha
Helix 47
47
C
264 292Right-handed alpha
Helix 48
48
C
294 323Right-handed alpha
Helix 49
49
D
15 22Right-handed alpha
Helix 50
50
D
22 33Right-handed alpha
Helix 51
51
D
43 47Right-handed 310
Helix 52
52
D
50 69Right-handed alpha
Helix 53
53
D
81 83Right-handed 310
Helix 54
54
D
84 95Right-handed alpha
Helix 55
55
D
98 104Right-handed alpha
Helix 56
56
D
105 112Right-handed alpha
Helix 57
57
D
120 135Right-handed alpha
Helix 58
58
D
147 166Right-handed alpha
Helix 59
59
D
199 203Right-handed 310
Helix 60
60
D
209 220Right-handed alpha
Helix 61
61
D
235 250Right-handed alpha
Helix 62
62
D
252 260Right-handed alpha
Helix 63
63
D
264 292Right-handed alpha
Helix 64
64
D
294 323Right-handed alpha
Helix 65
65
E
15 22Right-handed alpha
Helix 66
66
E
22 33Right-handed alpha
Helix 67
67
E
40 45Right-handed alpha
Helix 68
68
E
50 69Right-handed alpha
Helix 69
69
E
81 83Right-handed 310
Helix 70
70
E
84 95Right-handed alpha
Helix 71
71
E
98 104Right-handed alpha
Helix 72
72
E
105 112Right-handed alpha
Helix 73
73
E
120 135Right-handed alpha
Helix 74
74
E
147 166Right-handed alpha
Helix 75
75
E
199 203Right-handed 310
Helix 76
76
E
209 220Right-handed alpha
Helix 77
77
E
235 250Right-handed alpha
Helix 78
78
E
252 260Right-handed alpha
Helix 79
79
E
264 292Right-handed alpha
Helix 80
80
E
294 323Right-handed alpha
Helix 81
81
F
15 22Right-handed alpha
Helix 82
82
F
22 33Right-handed alpha
Helix 83
83
F
40 45Right-handed alpha
Helix 84
84
F
50 69Right-handed alpha
Helix 85
85
F
81 83Right-handed 310
Helix 86
86
F
84 95Right-handed alpha
Helix 87
87
F
98 104Right-handed alpha
Helix 88
88
F
105 112Right-handed alpha
Helix 89
89
F
120 135Right-handed alpha
Helix 90
90
F
147 166Right-handed alpha
Helix 91
91
F
199 203Right-handed 310
Helix 92
92
F
209 220Right-handed alpha
Helix 93
93
F
235 250Right-handed alpha
Helix 94
94
F
252 260Right-handed alpha
Helix 95
95
F
264 292Right-handed alpha
Helix 96
96
F
294 323Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1D2R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
34 39parallel
Strand 3
A
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
173 175parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
34 39parallel
Strand 3
B
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
173 175parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
34 39parallel
Strand 3
C
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 142first strand
Strand 2
C
173 175parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
34 39parallel
Strand 3
D
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 142first strand
Strand 2
D
173 175parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
34 39parallel
Strand 3
E
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 142first strand
Strand 2
E
173 175parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
34 39parallel
Strand 3
F
76 79parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
140 142first strand
Strand 2
F
173 175parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il