Analysis of interatomic Contacts of Structural Units in PDB entry:
1D3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D3E entry

There are 5 chains in PDB entry 1D3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
GLN 1PHE 185
1
ALA 1VAL 285
2
SER 10GLN 261
3
GLY 1GLN 238
4
GLY 1ASP 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1D3E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
I
116 118Right-handed 310
Helix 2
2
I
166 168Right-handed 310
Helix 3
1Z
1
66 72Right-handed alpha
Helix 4
1AO
1
98 101Right-handed alpha
Helix 5
1A
1
104 110Right-handed alpha
Helix 6
1B
1
158 162Right-handed alpha
Helix 7
2Z
2
56 59Right-handed alpha
Helix 8
2A
2
90 98Right-handed alpha
Helix 9
2B
2
179 184Right-handed alpha
Helix 10
3Z
3
44 47Right-handed alpha
Helix 11
3A
3
98 103Right-handed alpha
Helix 12
3B
3
143 148Right-handed alpha
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There are 14 sheets in PDB entry 1D3E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, B11, B12, B21, B22, B23, B31, B32, B33, B41,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
2 5first strand
Strand 2
I
17 23first strand
Strand 3
I
49 55first strand
Strand 4
I
38 42first strand
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
8 12first strand
Strand 2
I
79 83first strand
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
30 34first strand
Strand 2
I
64 68first strand
Strand 3
I
73 77first strand
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
88 91first strand
Strand 2
I
140 147first strand
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
172 176first strand
Strand 2
I
157 164first strand
Strand 3
I
119 125first strand
Strand 4
I
128 134first strand
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There are 4 strands in B11 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
75 83first strand
Strand 2
1
230 248first strand
Strand 3
1
112 130first strand
Strand 4
1
177 192first strand
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There are 4 strands in B12 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
93 97first strand
Strand 2
1
216 221first strand
Strand 3
1
137 145first strand
Strand 4
1
165 171first strand
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There are 2 strands in B21 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25first strand
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There are 4 strands in B22 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
69 71first strand
Strand 2
2
238 254first strand
Strand 3
2
99 111first strand
Strand 4
2
196 202first strand
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There are 4 strands in B23 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
2
78 82first strand
Strand 2
2
219 230first strand
Strand 3
2
119 128first strand
Strand 4
2
187 191first strand
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There are 1 strands in B31 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
2 6first strand
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There are 4 strands in B32 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
69 72first strand
Strand 2
3
207 224first strand
Strand 3
3
106 119first strand
Strand 4
3
162 167first strand
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There are 4 strands in B33 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
3
78 87first strand
Strand 2
3
188 193first strand
Strand 3
3
128 134first strand
Strand 4
3
151 156first strand
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There are 2 strands in B41 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
4
2 6first strand
Strand 2
4
23 30first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il