Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 1D5J entry
There are 2 chains in PDB entry 1D5J
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
PHE 83 | ASP 251 |
B
|
PHE 583 | THR 755 |
Back to top of page
There are 6
helices in PDB entry 1D5J. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
1 | A
| 109 |
126 | Right-handed alpha |
| Helix 2 |
2 | A
| 195 |
208 | Right-handed alpha |
| Helix 3 |
3 | A
| 235 |
247 | Right-handed alpha |
| Helix 4 |
4 | B
| 609 |
626 | Right-handed alpha |
| Helix 5 |
5 | B
| 695 |
706 | Right-handed alpha |
| Helix 6 |
6 | B
| 735 |
747 | Right-handed alpha |
Back to top of page
There are
4 sheets in PDB entry 1D5J. Click on sheet of
interest to get list of strands forming it:
A,
B,
C,
D,
There are 5
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 131 |
134 | first strand |
| Strand 2 |
A
| 96 |
101 | parallel |
| Strand 3 |
A
| 142 |
147 | parallel |
| Strand 4 |
A
| 178 |
181 | parallel |
| Strand 5 |
A
| 165 |
167 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in B sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
A
| 186 |
187 | first strand |
| Strand 2 |
A
| 193 |
194 | parallel |
Back to list of sheets
Back to top of page
There are 5
strands in C sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 631 |
634 | first strand |
| Strand 2 |
B
| 596 |
601 | parallel |
| Strand 3 |
B
| 642 |
647 | parallel |
| Strand 4 |
B
| 678 |
681 | parallel |
| Strand 5 |
B
| 665 |
667 | anti-parallel |
Back to list of sheets
Back to top of page
There are 2
strands in D sheet. Click on strand of interest
for CSU analysis.
Strand
number
| Chain
ID |
Initial
residue | Terminal
residue |
Strand sense |
|---|
| Strand 1 |
B
| 686 |
687 | first strand |
| Strand 2 |
B
| 693 |
694 | parallel |
Back to list of sheets
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il