Analysis of interatomic Contacts of Structural Units in PDB entry:
1D5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D5T entry

There is 1 chain in PDB entry 1D5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -2PHE 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1D5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
48 56Right-handed alpha
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
85 95Right-handed alpha
Helix 6
6
A
96 100Right-handed 310
Helix 7
7
A
122 129Right-handed alpha
Helix 8
8
A
133 150Right-handed alpha
Helix 9
9
A
154 159Right-handed 310
Helix 10
10
A
167 175Right-handed alpha
Helix 11
11
A
178 189Right-handed alpha
Helix 12
12
A
195 200Right-handed 310
Helix 13
13
A
202 215Right-handed alpha
Helix 14
14
A
232 246Right-handed alpha
Helix 15
15
A
284 289Right-handed 310
Helix 16
16
A
322 326Right-handed 310
Helix 17
17
A
340 342Right-handed 310
Helix 18
18
A
361 366Right-handed alpha
Helix 19
19
A
366 371Right-handed alpha
Helix 20
20
A
410 426Right-handed alpha
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There are 5 sheets in PDB entry 1D5T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
7 10parallel
Strand 3
A
279 282parallel
Strand 4
A
398 400parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
74 75anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
224 227anti-parallel
Strand 3
A
102 104anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
317 321parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
349 356anti-parallel
Strand 6
A
291 304anti-parallel
Strand 7
A
378 389anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
264 270anti-parallel
Strand 3
A
273 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il