Analysis of interatomic Contacts of Structural Units in PDB entry:
1D7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1D7D entry

There are 2 chains in PDB entry 1D7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 186
B
 SER 2ASN 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1D7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
174 176Right-handed 310
Helix 2
2
A
180 186Right-handed alpha
Helix 3
3
B
174 176Right-handed 310
Helix 4
4
B
180 186Right-handed alpha
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There are 6 sheets in PDB entry 1D7D. Click on sheet of interest to get list of strands forming it: A, A1, B, C, C1, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
44 51anti-parallel
Strand 5
A
114 122anti-parallel
Strand 6
A
101 104anti-parallel
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There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
25 30anti-parallel
Strand 4
A
44 51anti-parallel
Strand 5
A
114 122anti-parallel
Strand 6
A
109 110anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
79 86anti-parallel
Strand 3
A
70 76anti-parallel
Strand 4
A
56 60anti-parallel
Strand 5
A
138 146anti-parallel
Strand 6
A
165 172anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
25 30anti-parallel
Strand 4
B
44 51anti-parallel
Strand 5
B
114 122anti-parallel
Strand 6
B
101 104anti-parallel
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There are 6 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
25 30anti-parallel
Strand 4
B
44 51anti-parallel
Strand 5
B
114 122anti-parallel
Strand 6
B
109 110anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
79 86anti-parallel
Strand 3
B
70 76anti-parallel
Strand 4
B
56 60anti-parallel
Strand 5
B
138 146anti-parallel
Strand 6
B
165 172anti-parallel
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