Analysis of interatomic Contacts of Structural Units in PDB entry:
1DE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DE6 entry

There are 4 chains in PDB entry 1DE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11ARG 426
B
 THR 11ARG 426
C
 THR 11ARG 426
D
 THR 11ARG 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 1DE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
30 39Right-handed alpha
Helix 3
3
A
48 50Right-handed 310
Helix 4
4
A
79 93Right-handed alpha
Helix 5
5
A
105 107Right-handed 310
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
119 122Right-handed 310
Helix 8
8
A
123 133Right-handed alpha
Helix 9
9
A
146 150Right-handed 310
Helix 10
10
A
159 185Right-handed alpha
Helix 11
11
A
205 221Right-handed alpha
Helix 12
12
A
249 261Right-handed alpha
Helix 13
13
A
276 285Right-handed alpha
Helix 14
14
A
310 323Right-handed alpha
Helix 15
15
A
341 362Right-handed alpha
Helix 16
16
A
364 373Right-handed alpha
Helix 17
17
A
376 388Right-handed alpha
Helix 18
18
A
391 403Right-handed alpha
Helix 19
19
A
409 422Right-handed alpha
Helix 20
20
A
423 426Right-handed 310
Helix 21
21
B
11 26Right-handed alpha
Helix 22
22
B
30 39Right-handed alpha
Helix 23
23
B
48 51Right-handed 310
Helix 24
24
B
79 92Right-handed alpha
Helix 25
25
B
105 107Right-handed 310
Helix 26
26
B
114 118Right-handed 310
Helix 27
27
B
119 122Right-handed 310
Helix 28
28
B
123 134Right-handed alpha
Helix 29
29
B
146 150Right-handed 310
Helix 30
30
B
159 185Right-handed alpha
Helix 31
31
B
205 220Right-handed alpha
Helix 32
32
B
249 261Right-handed alpha
Helix 33
33
B
276 285Right-handed alpha
Helix 34
34
B
310 323Right-handed alpha
Helix 35
35
B
341 362Right-handed alpha
Helix 36
36
B
364 373Right-handed alpha
Helix 37
37
B
376 388Right-handed alpha
Helix 38
38
B
391 403Right-handed alpha
Helix 39
39
B
410 422Right-handed alpha
Helix 40
40
B
423 426Right-handed 310
Helix 41
41
C
11 26Right-handed alpha
Helix 42
42
C
30 39Right-handed alpha
Helix 43
43
C
48 51Right-handed 310
Helix 44
44
C
79 92Right-handed alpha
Helix 45
45
C
105 107Right-handed 310
Helix 46
46
C
114 118Right-handed 310
Helix 47
47
C
119 122Right-handed 310
Helix 48
48
C
123 134Right-handed alpha
Helix 49
49
C
159 185Right-handed alpha
Helix 50
50
C
205 221Right-handed alpha
Helix 51
51
C
249 261Right-handed alpha
Helix 52
52
C
276 285Right-handed alpha
Helix 53
53
C
310 324Right-handed alpha
Helix 54
54
C
341 362Right-handed alpha
Helix 55
55
C
364 373Right-handed alpha
Helix 56
56
C
376 388Right-handed alpha
Helix 57
57
C
391 403Right-handed alpha
Helix 58
58
C
410 422Right-handed alpha
Helix 59
59
C
423 426Right-handed 310
Helix 60
60
D
11 26Right-handed alpha
Helix 61
61
D
30 39Right-handed alpha
Helix 62
62
D
48 50Right-handed 310
Helix 63
63
D
79 93Right-handed alpha
Helix 64
64
D
105 107Right-handed 310
Helix 65
65
D
114 118Right-handed 310
Helix 66
66
D
119 122Right-handed 310
Helix 67
67
D
123 134Right-handed alpha
Helix 68
68
D
146 150Right-handed 310
Helix 69
69
D
159 185Right-handed alpha
Helix 70
70
D
206 220Right-handed alpha
Helix 71
71
D
249 261Right-handed alpha
Helix 72
72
D
276 285Right-handed alpha
Helix 73
73
D
310 323Right-handed alpha
Helix 74
74
D
341 362Right-handed alpha
Helix 75
75
D
364 373Right-handed alpha
Helix 76
76
D
376 387Right-handed alpha
Helix 77
77
D
388 390Right-handed 310
Helix 78
78
D
391 403Right-handed alpha
Helix 79
79
D
410 422Right-handed alpha
Helix 80
80
D
423 426Right-handed 310
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There are 10 sheets in PDB entry 1DE6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
98 103parallel
Strand 3
A
136 140parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
229 234parallel
Strand 3
A
263 267parallel
Strand 4
A
291 295parallel
Strand 5
A
329 333parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
245 246anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
98 103parallel
Strand 3
B
136 140parallel
Strand 4
B
188 192parallel
Strand 5
B
229 234parallel
Strand 6
B
263 267parallel
Strand 7
B
291 295parallel
Strand 8
B
329 333parallel
Strand 9
B
43 46parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
245 246anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 46first strand
Strand 2
C
98 103parallel
Strand 3
C
136 140parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 192first strand
Strand 2
C
229 234parallel
Strand 3
C
263 267parallel
Strand 4
C
291 295parallel
Strand 5
C
329 333parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 198first strand
Strand 2
C
245 246anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 46first strand
Strand 2
D
98 103parallel
Strand 3
D
136 140parallel
Strand 4
D
188 192parallel
Strand 5
D
229 234parallel
Strand 6
D
263 267parallel
Strand 7
D
291 295parallel
Strand 8
D
329 333parallel
Strand 9
D
43 46parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
197 198first strand
Strand 2
D
245 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il