Analysis of interatomic Contacts of Structural Units in PDB entry:
1DGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DGB entry

There are 4 chains in PDB entry 1DGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 4ASN 501
B
SER 4ASN 501
C
SER 4ASN 501
D
ARG 5ASN 501
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 1DGB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 9Right-handed 310
Helix 2
2
A
10 18Right-handed alpha
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
157 159Right-handed 310
Helix 6
6
A
160 169Right-handed alpha
Helix 7
7
A
178 189Right-handed alpha
Helix 8
8
A
192 200Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
246 257Right-handed alpha
Helix 11
11
A
259 271Right-handed alpha
Helix 12
12
A
285 292Right-handed alpha
Helix 13
13
A
324 329Right-handed alpha
Helix 14
14
A
348 366Right-handed alpha
Helix 15
15
A
369 373Right-handed 310
Helix 16
16
A
373 377Right-handed 310
Helix 17
17
A
415 419Right-handed 310
Helix 18
18
A
440 450Right-handed alpha
Helix 19
19
A
452 468Right-handed alpha
Helix 20
20
A
471 486Right-handed alpha
Helix 21
21
A
486 501Right-handed alpha
Helix 22
22
B
10 19Right-handed alpha
Helix 23
23
B
54 65Right-handed alpha
Helix 24
24
B
97 101Right-handed 310
Helix 25
25
B
157 159Right-handed 310
Helix 26
26
B
160 169Right-handed alpha
Helix 27
27
B
178 189Right-handed alpha
Helix 28
28
B
192 200Right-handed alpha
Helix 29
29
B
201 205Right-handed 310
Helix 30
30
B
246 257Right-handed alpha
Helix 31
31
B
259 271Right-handed alpha
Helix 32
32
B
285 292Right-handed alpha
Helix 33
33
B
324 329Right-handed alpha
Helix 34
34
B
348 366Right-handed alpha
Helix 35
35
B
369 373Right-handed 310
Helix 36
36
B
373 377Right-handed 310
Helix 37
37
B
415 419Right-handed 310
Helix 38
38
B
440 449Right-handed alpha
Helix 39
39
B
452 468Right-handed alpha
Helix 40
40
B
471 486Right-handed alpha
Helix 41
41
B
486 501Right-handed alpha
Helix 42
42
C
10 19Right-handed alpha
Helix 43
43
C
54 65Right-handed alpha
Helix 44
44
C
157 159Right-handed 310
Helix 45
45
C
160 169Right-handed alpha
Helix 46
46
C
178 189Right-handed alpha
Helix 47
47
C
192 200Right-handed alpha
Helix 48
48
C
201 205Right-handed 310
Helix 49
49
C
246 257Right-handed alpha
Helix 50
50
C
259 271Right-handed alpha
Helix 51
51
C
285 291Right-handed alpha
Helix 52
52
C
324 329Right-handed alpha
Helix 53
53
C
348 366Right-handed alpha
Helix 54
54
C
369 373Right-handed 310
Helix 55
55
C
415 419Right-handed 310
Helix 56
56
C
440 450Right-handed alpha
Helix 57
57
C
452 468Right-handed alpha
Helix 58
58
C
471 486Right-handed alpha
Helix 59
59
C
486 501Right-handed alpha
Helix 60
60
D
7 9Right-handed 310
Helix 61
61
D
10 20Right-handed alpha
Helix 62
62
D
54 65Right-handed alpha
Helix 63
63
D
97 101Right-handed 310
Helix 64
64
D
157 159Right-handed 310
Helix 65
65
D
160 169Right-handed alpha
Helix 66
66
D
178 189Right-handed alpha
Helix 67
67
D
192 200Right-handed alpha
Helix 68
68
D
201 205Right-handed 310
Helix 69
69
D
208 212Right-handed 310
Helix 70
70
D
246 257Right-handed alpha
Helix 71
71
D
259 271Right-handed alpha
Helix 72
72
D
287 292Right-handed alpha
Helix 73
73
D
324 329Right-handed alpha
Helix 74
74
D
348 366Right-handed alpha
Helix 75
75
D
369 373Right-handed 310
Helix 76
76
D
373 377Right-handed 310
Helix 77
77
D
415 419Right-handed 310
Helix 78
78
D
440 449Right-handed alpha
Helix 79
79
D
452 468Right-handed alpha
Helix 80
80
D
471 486Right-handed alpha
Helix 81
81
D
486 501Right-handed alpha
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There are 7 sheets in PDB entry 1DGB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 44first strand
Strand 2
C
428 431anti-parallel
Strand 3
D
423 424anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 345first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
276 284anti-parallel
Strand 5
A
311 320anti-parallel
Strand 6
A
78 87anti-parallel
Strand 7
A
106 114anti-parallel
Strand 8
A
131 138anti-parallel
Strand 9
A
141 148anti-parallel
Strand 10
A
214 215anti-parallel
Strand 11
A
229 238anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 44first strand
Strand 2
A
424 431anti-parallel
Strand 3
B
424 431anti-parallel
Strand 4
D
42 44anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 44first strand
Strand 2
D
427 431anti-parallel
Strand 3
C
424 425anti-parallel
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There are 11 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
220 223anti-parallel
Strand 3
B
229 238anti-parallel
Strand 4
B
276 284anti-parallel
Strand 5
B
311 320anti-parallel
Strand 6
B
78 87anti-parallel
Strand 7
B
106 114anti-parallel
Strand 8
B
131 138anti-parallel
Strand 9
B
141 148anti-parallel
Strand 10
B
214 215anti-parallel
Strand 11
B
229 238anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 344first strand
Strand 2
C
220 223anti-parallel
Strand 3
C
229 238anti-parallel
Strand 4
C
276 284anti-parallel
Strand 5
C
311 320anti-parallel
Strand 6
C
78 87anti-parallel
Strand 7
C
106 114anti-parallel
Strand 8
C
131 138anti-parallel
Strand 9
C
141 148anti-parallel
Strand 10
C
214 215anti-parallel
Strand 11
C
229 238anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
343 345first strand
Strand 2
D
220 223anti-parallel
Strand 3
D
229 238anti-parallel
Strand 4
D
276 284anti-parallel
Strand 5
D
311 320anti-parallel
Strand 6
D
78 87anti-parallel
Strand 7
D
106 114anti-parallel
Strand 8
D
131 138anti-parallel
Strand 9
D
141 148anti-parallel
Strand 10
D
214 215anti-parallel
Strand 11
D
229 238anti-parallel
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