Analysis of interatomic Contacts of Structural Units in PDB entry:
1DMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DMT entry

There is 1 chain in PDB entry 1DMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54TRP 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1DMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 72Right-handed alpha
Helix 2
2
A
81 88Right-handed alpha
Helix 3
3
A
87 94Right-handed alpha
Helix 4
4
A
105 122Right-handed alpha
Helix 5
5
A
129 144Right-handed alpha
Helix 6
6
A
144 151Right-handed alpha
Helix 7
7
A
153 160Right-handed alpha
Helix 8
8
A
161 164Right-handed 310
Helix 9
9
A
166 170Right-handed 310
Helix 10
10
A
172 177Right-handed alpha
Helix 11
11
A
182 195Right-handed alpha
Helix 12
12
A
227 233Right-handed 310
Helix 13
13
A
234 236Right-handed 310
Helix 14
14
A
237 259Right-handed alpha
Helix 15
15
A
264 286Right-handed alpha
Helix 16
16
A
288 292Right-handed 310
Helix 17
17
A
294 299Right-handed alpha
Helix 18
18
A
304 311Right-handed alpha
Helix 19
19
A
321 331Right-handed alpha
Helix 20
20
A
332 334Right-handed 310
Helix 21
21
A
347 359Right-handed alpha
Helix 22
22
A
362 379Right-handed alpha
Helix 23
23
A
380 382Right-handed 310
Helix 24
24
A
383 389Right-handed alpha
Helix 25
25
A
390 399Right-handed alpha
Helix 26
26
A
405 418Right-handed alpha
Helix 27
27
A
418 431Right-handed alpha
Helix 28
28
A
434 457Right-handed alpha
Helix 29
29
A
461 475Right-handed alpha
Helix 30
30
A
483 488Right-handed alpha
Helix 31
31
A
488 496Right-handed alpha
Helix 32
32
A
505 523Right-handed alpha
Helix 33
33
A
557 559Right-handed 310
Helix 34
34
A
569 576Right-handed alpha
Helix 35
35
A
576 587Right-handed alpha
Helix 36
36
A
588 590Right-handed 310
Helix 37
37
A
592 595Right-handed 310
Helix 38
38
A
607 627Right-handed alpha
Helix 39
39
A
630 634Right-handed 310
Helix 40
40
A
643 669Right-handed alpha
Helix 41
41
A
680 693Right-handed alpha
Helix 42
42
A
698 709Right-handed alpha
Helix 43
43
A
713 724Right-handed alpha
Helix 44
44
A
725 732Right-handed alpha
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There are 3 sheets in PDB entry 1DMT. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
695 697anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
342 345parallel
Strand 4
A
301 303anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 480first strand
Strand 2
A
551 555parallel
Strand 3
A
544 546anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il