Analysis of interatomic Contacts of Structural Units in PDB entry:
1DMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DMU entry

There are 2 chains in PDB entry 1DMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
A -8 T 8
A
MET 1LYS 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1DMU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
23 45Right-handed alpha
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
59 64Right-handed alpha
Helix 5
5
A
82 90Right-handed alpha
Helix 6
6
A
90 100Right-handed alpha
Helix 7
7
A
123 130Right-handed alpha
Helix 8
8
A
158 162Right-handed 310
Helix 9
9
A
222 224Right-handed 310
Helix 10
10
A
242 248Right-handed alpha
Helix 11
11
A
251 255Right-handed 310
Helix 12
12
A
255 259Right-handed 310
Helix 13
13
A
282 286Right-handed alpha
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There are 4 sheets in PDB entry 1DMU. Click on sheet of interest to get list of strands forming it: A, A1, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
292 296first strand
Strand 2
A
230 240anti-parallel
Strand 3
A
206 220anti-parallel
Strand 4
A
136 143parallel
Strand 5
A
117 122anti-parallel
Strand 6
A
105 107anti-parallel
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There are 4 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
292 296first strand
Strand 2
A
230 240anti-parallel
Strand 3
A
206 220anti-parallel
Strand 4
A
198 200anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 157first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
262 264anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
180 183first strand
Strand 2
A
188 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il