Analysis of interatomic Contacts of Structural Units in PDB entry:
1DNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DNR entry

There is 1 chain in PDB entry 1DNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 313SER 621
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1DNR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
328 337Right-handed 310
Helix 2
2
A
392 397Right-handed 310
Helix 3
3
A
452 457Right-handed alpha
Helix 4
4
A
471 476Right-handed alpha
Helix 5
5
A
586 590Right-handed 310
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There are 7 sheets in PDB entry 1DNR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
316 318first strand
Strand 2
A
345 347parallel
Strand 3
A
381 386parallel
Strand 4
A
412 419parallel
Strand 5
A
436 442parallel
Strand 6
A
465 469parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
340 341first strand
Strand 2
A
376 377parallel
Strand 3
A
401 402parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
505 507first strand
Strand 2
A
510 512anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
519 520first strand
Strand 2
A
532 533anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 539first strand
Strand 2
A
557 558anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
561 563first strand
Strand 2
A
566 568anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
575 577first strand
Strand 2
A
593 595anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il