Analysis of interatomic Contacts of Structural Units in PDB entry:
1DOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DOT entry

There is 1 chain in PDB entry 1DOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1DOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
N1
A
14 26Right-handed alpha
Helix 2
N2
A
42 50Right-handed alpha
Helix 3
N3
A
61 68Right-handed alpha
Helix 4
N4
A
106 109Right-handed alpha
Helix 5
N5
A
122 135Right-handed alpha
Helix 6
N6
A
149 155Right-handed alpha
Helix 7
N7
A
190 200Right-handed alpha
Helix 8
N8
A
211 216Right-handed alpha
Helix 9
N9
A
262 274Right-handed alpha
Helix 10
N10
A
315 320Right-handed alpha
Helix 11
N11
A
322 332Right-handed alpha
Helix 12
C1
A
352 365Right-handed alpha
Helix 13
C2
A
376 386Right-handed alpha
Helix 14
C3
A
396 404Right-handed alpha
Helix 15
C4
A
446 447Right-handed alpha
Helix 16
C5
A
462 475Right-handed alpha
Helix 17
C6
A
481 483Right-handed alpha
Helix 18
C7
A
523 534Right-handed alpha
Helix 19
C8
A
543 549Right-handed alpha
Helix 20
C9
A
600 614Right-handed alpha
Helix 21
C10
A
653 657Right-handed alpha
Helix 22
C11
A
659 671Right-handed alpha
Helix 23
C12
A
675 683Right-handed alpha
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There are 6 sheets in PDB entry 1DOT. Click on sheet of interest to get list of strands forming it: N1, N12, N2, C1, C12, C2,

There are 6 strands in N1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
6 11parallel
Strand 3
A
55 59parallel
Strand 4
A
251 255parallel
Strand 5
A
75 81parallel
Strand 6
A
305 308parallel
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There are 2 strands in N12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
245 248anti-parallel
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There are 6 strands in N2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
112 116parallel
Strand 3
A
205 208parallel
Strand 4
A
95 98anti-parallel
Strand 5
A
224 228anti-parallel
Strand 6
A
232 234anti-parallel
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There are 6 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
345 351parallel
Strand 3
A
390 395parallel
Strand 4
A
592 596anti-parallel
Strand 5
A
408 412anti-parallel
Strand 6
A
643 647anti-parallel
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There are 2 strands in C12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 433first strand
Strand 2
A
586 589anti-parallel
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There are 6 strands in C2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
451 455parallel
Strand 3
A
537 540parallel
Strand 4
A
433 437anti-parallel
Strand 5
A
567 570anti-parallel
Strand 6
A
574 576anti-parallel
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