Analysis of interatomic Contacts of Structural Units in PDB entry:
1DTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DTQ entry

There are 3 chains in PDB entry 1DTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 4LEU 279
A
LYS 281HIS 539
B
ILE 5GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 1DTQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
27 44Right-handed alpha
Helix 2
2
A
77 84Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
121 126Right-handed alpha
Helix 5
5
A
127 129Right-handed 310
Helix 6
6
A
155 175Right-handed alpha
Helix 7
7
A
194 211Right-handed alpha
Helix 8
8
A
218 222Right-handed 310
Helix 9
9
A
253 269Right-handed alpha
Helix 10
10
A
296 312Right-handed alpha
Helix 11
11
A
363 384Right-handed alpha
Helix 12
12
A
394 405Right-handed alpha
Helix 13
13
A
473 489Right-handed alpha
Helix 14
14
A
499 508Right-handed alpha
Helix 15
15
A
515 528Right-handed alpha
Helix 16
16
B
27 44Right-handed alpha
Helix 17
17
B
77 83Right-handed alpha
Helix 18
18
B
99 103Right-handed 310
Helix 19
19
B
112 118Right-handed 310
Helix 20
20
B
121 126Right-handed alpha
Helix 21
21
B
127 129Right-handed 310
Helix 22
22
B
134 138Right-handed 310
Helix 23
23
B
154 175Right-handed alpha
Helix 24
24
B
194 211Right-handed alpha
Helix 25
25
B
235 239Right-handed 310
Helix 26
26
B
253 268Right-handed alpha
Helix 27
27
B
276 281Right-handed alpha
Helix 28
28
B
296 310Right-handed alpha
Helix 29
29
B
363 384Right-handed alpha
Helix 30
30
B
394 406Right-handed alpha
Helix 31
31
B
420 427Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 1DTQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
47 49first strand
Strand 2
A
142 146anti-parallel
Strand 3
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 63first strand
Strand 2
A
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 182anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 229first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
238 241anti-parallel
Strand 4
A
316 317anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
347 354first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 362first strand
Strand 2
A
512 513anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
438 441first strand
Strand 2
A
492 497parallel
Strand 3
A
530 535parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
105 110first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
347 355first strand
Strand 2
B
336 344anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
413 416parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il