Analysis of interatomic Contacts of Structural Units in PDB entry:
1DTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DTT entry

There are 3 chains in PDB entry 1DTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1LEU 279
A
 LYS 281GLY 543
B
 ILE 5GLU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1DTT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 45Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
96 100Right-handed 310
Helix 4
4
A
112 118Right-handed 310
Helix 5
5
A
121 126Right-handed alpha
Helix 6
6
A
154 175Right-handed alpha
Helix 7
7
A
194 211Right-handed alpha
Helix 8
8
A
218 222Right-handed 310
Helix 9
9
A
253 269Right-handed alpha
Helix 10
10
A
296 310Right-handed alpha
Helix 11
11
A
363 384Right-handed alpha
Helix 12
12
A
394 403Right-handed alpha
Helix 13
13
A
473 488Right-handed alpha
Helix 14
14
A
499 508Right-handed alpha
Helix 15
15
A
515 528Right-handed alpha
Helix 16
16
B
27 44Right-handed alpha
Helix 17
17
B
77 84Right-handed alpha
Helix 18
18
B
98 103Right-handed alpha
Helix 19
19
B
111 118Right-handed alpha
Helix 20
20
B
121 126Right-handed alpha
Helix 21
21
B
127 129Right-handed 310
Helix 22
22
B
134 138Right-handed 310
Helix 23
23
B
154 173Right-handed alpha
Helix 24
24
B
194 213Right-handed alpha
Helix 25
25
B
235 239Right-handed 310
Helix 26
26
B
254 268Right-handed alpha
Helix 27
27
B
276 283Right-handed alpha
Helix 28
28
B
296 311Right-handed alpha
Helix 29
29
B
363 384Right-handed alpha
Helix 30
30
B
394 406Right-handed alpha
Helix 31
31
B
420 429Right-handed alpha
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There are 10 sheets in PDB entry 1DTT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
178 183anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
232 234anti-parallel
Strand 3
A
239 241anti-parallel
Strand 4
A
314 316anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 355first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
326 333anti-parallel
Strand 4
A
388 391parallel
Strand 5
A
414 416parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 441first strand
Strand 2
A
492 497parallel
Strand 3
A
530 535parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 446first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
464 470anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 110first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
179 183anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
292 293anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 355first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
388 391parallel
Strand 5
B
414 416parallel
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