Analysis of interatomic Contacts of Structural Units in PDB entry:
1DZL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1DZL entry

There is 1 chain in PDB entry 1DZL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 20LEU 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1DZL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 27Right-handed 310
Helix 2
2
A
209 214Right-handed alpha
Helix 3
3
A
221 226Right-handed alpha
Helix 4
4
A
233 240Right-handed alpha
Helix 5
5
A
272 276Right-handed 310
Helix 6
6
A
325 328Right-handed 310
Helix 7
7
A
356 358Right-handed 310
Helix 8
8
A
384 395Right-handed alpha
Helix 9
9
A
396 402Right-handed alpha
Helix 10
10
A
413 426Right-handed alpha
Helix 11
11
A
458 461Right-handed 310
Helix 12
12
A
462 473Right-handed alpha
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There are 8 sheets in PDB entry 1DZL. Click on sheet of interest to get list of strands forming it: A, A1, A2, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
96 102anti-parallel
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There are 4 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
371 377anti-parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
310 312anti-parallel
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There are 3 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
360 370anti-parallel
Strand 3
A
342 347anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
60 62anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 254first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
447 450parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
145 149anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
291 296anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
229 232anti-parallel
Strand 4
A
200 201parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il