Analysis of interatomic Contacts of Structural Units in PDB entry:
1EBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EBL entry

There are 2 chains in PDB entry 1EBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 317
B
 MSE 1PHE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1EBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
50 67Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
141 146Right-handed alpha
Helix 9
9
A
150 155Right-handed alpha
Helix 10
10
A
183 187Right-handed 310
Helix 11
11
A
208 231Right-handed alpha
Helix 12
12
A
234 238Right-handed 310
Helix 13
13
A
247 259Right-handed alpha
Helix 14
14
A
261 264Right-handed 310
Helix 15
15
A
268 273Right-handed alpha
Helix 16
16
A
275 277Right-handed 310
Helix 17
17
A
278 290Right-handed alpha
Helix 18
18
B
19 26Right-handed alpha
Helix 19
19
B
29 38Right-handed alpha
Helix 20
20
B
50 67Right-handed alpha
Helix 21
21
B
69 73Right-handed 310
Helix 22
22
B
89 98Right-handed alpha
Helix 23
23
B
110 112Right-handed 310
Helix 24
24
B
113 128Right-handed alpha
Helix 25
25
B
141 146Right-handed alpha
Helix 26
26
B
150 155Right-handed alpha
Helix 27
27
B
183 187Right-handed 310
Helix 28
28
B
208 231Right-handed alpha
Helix 29
29
B
234 238Right-handed 310
Helix 30
30
B
247 258Right-handed alpha
Helix 31
31
B
261 264Right-handed 310
Helix 32
32
B
268 273Right-handed alpha
Helix 33
33
B
275 277Right-handed 310
Helix 34
34
B
278 290Right-handed alpha
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There are 7 sheets in PDB entry 1EBL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 11first strand
Strand 2
A
160 169anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
105 109parallel
Strand 6
B
105 109anti-parallel
Strand 7
B
76 79parallel
Strand 8
B
133 140parallel
Strand 9
B
160 169anti-parallel
Strand 10
B
2 11anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
B
189 192anti-parallel
Strand 3
B
206 207anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
309 316anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
240 243parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
189 192anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
41 44anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 181first strand
Strand 2
B
309 316anti-parallel
Strand 3
B
298 305anti-parallel
Strand 4
B
240 243parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il