Analysis of interatomic Contacts of Structural Units in PDB entry:
1EJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1EJD entry

There are 4 chains in PDB entry 1EJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 66
A
 GLY 68GLU 419
B
 MET 1ARG 66
B
 GLY 68GLU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1EJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
47 60Right-handed alpha
Helix 3
3
A
83 88Right-handed alpha
Helix 4
4
A
90 95Right-handed 310
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
122 132Right-handed alpha
Helix 7
7
A
162 174Right-handed alpha
Helix 8
8
A
188 201Right-handed alpha
Helix 9
9
A
231 244Right-handed alpha
Helix 10
10
A
255 258Right-handed 310
Helix 11
11
A
259 269Right-handed alpha
Helix 12
12
A
303 305Right-handed 310
Helix 13
13
A
306 316Right-handed alpha
Helix 14
14
A
333 341Right-handed alpha
Helix 15
15
A
369 383Right-handed alpha
Helix 16
16
A
392 399Right-handed alpha
Helix 17
17
A
401 408Right-handed alpha
Helix 18
18
B
21 32Right-handed alpha
Helix 19
19
B
47 60Right-handed alpha
Helix 20
20
B
83 88Right-handed alpha
Helix 21
21
B
90 95Right-handed 310
Helix 22
22
B
96 105Right-handed alpha
Helix 23
23
B
122 132Right-handed alpha
Helix 24
24
B
162 174Right-handed alpha
Helix 25
25
B
188 201Right-handed alpha
Helix 26
26
B
231 244Right-handed alpha
Helix 27
27
B
255 258Right-handed 310
Helix 28
28
B
259 269Right-handed alpha
Helix 29
29
B
303 305Right-handed 310
Helix 30
30
B
306 316Right-handed alpha
Helix 31
31
B
334 341Right-handed alpha
Helix 32
32
B
369 383Right-handed alpha
Helix 33
33
B
392 399Right-handed alpha
Helix 34
34
B
401 408Right-handed alpha
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There are 12 sheets in PDB entry 1EJD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
385 389parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
412 417anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
248 252parallel
Strand 3
A
279 283anti-parallel
Strand 4
A
272 275anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
224 227parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
106 110parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
179 183parallel
Strand 3
A
212 216anti-parallel
Strand 4
A
204 206anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
320 324parallel
Strand 3
A
351 355anti-parallel
Strand 4
A
344 348anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
385 390parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
412 416anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
248 252parallel
Strand 3
B
279 283anti-parallel
Strand 4
B
272 275anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
70 73anti-parallel
Strand 3
B
39 42anti-parallel
Strand 4
B
224 227parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
106 110parallel
Strand 3
B
142 146anti-parallel
Strand 4
B
135 139anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
179 183parallel
Strand 3
B
212 216anti-parallel
Strand 4
B
204 206anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
320 325parallel
Strand 3
B
351 355anti-parallel
Strand 4
B
344 348anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il