Analysis of interatomic Contacts of Structural Units in PDB entry:
1F15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F15 entry

There are 3 chains in PDB entry 1F15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 62VAL 218
B
ASP 29VAL 218
C
ALA 28VAL 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1F15. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
93 98Right-handed alpha
Helix 2
2
A
138 145Right-handed alpha
Helix 3
3
A
170 174Right-handed 310
Helix 4
4
A
177 181Right-handed alpha
Helix 5
5
B
31 48Right-handed alpha
Helix 6
6
B
93 98Right-handed alpha
Helix 7
7
B
136 145Right-handed alpha
Helix 8
8
B
171 174Right-handed 310
Helix 9
9
B
178 181Right-handed 310
Helix 10
10
C
30 48Right-handed alpha
Helix 11
11
C
93 98Right-handed alpha
Helix 12
12
C
137 143Right-handed alpha
Helix 13
13
C
171 174Right-handed 310
Helix 14
14
C
178 181Right-handed 310
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There are 8 sheets in PDB entry 1F15. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 176first strand
Strand 2
A
103 113anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
68 69anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 176first strand
Strand 2
A
103 113anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
72 75anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 89first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
121 127anti-parallel
Strand 4
A
151 153anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 75first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
103 112anti-parallel
Strand 4
B
165 169anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 75first strand
Strand 2
B
200 208anti-parallel
Strand 3
B
103 112anti-parallel
Strand 4
B
175 176anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
85 89first strand
Strand 2
B
183 189anti-parallel
Strand 3
B
120 127anti-parallel
Strand 4
B
151 154anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
68 75first strand
Strand 2
C
199 208anti-parallel
Strand 3
C
106 113anti-parallel
Strand 4
C
165 169anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
87 89first strand
Strand 2
C
183 189anti-parallel
Strand 3
C
120 127anti-parallel
Strand 4
C
151 154anti-parallel
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