Analysis of interatomic Contacts of Structural Units in PDB entry:
1F5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1F5Q entry

There are 4 chains in PDB entry 1F5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 298
B
PHE 6ALA 252
C
MET 1ARG 297
D
GLU 5ALA 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 1F5Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
87 93Right-handed alpha
Helix 3
3
A
100 120Right-handed alpha
Helix 4
4
A
129 131Right-handed 310
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
182 199Right-handed alpha
Helix 7
7
A
208 220Right-handed alpha
Helix 8
8
A
229 233Right-handed 310
Helix 9
9
A
247 252Right-handed alpha
Helix 10
10
A
258 267Right-handed alpha
Helix 11
11
A
276 282Right-handed alpha
Helix 12
12
A
283 287Right-handed 310
Helix 13
13
B
16 36Right-handed alpha
Helix 14
14
B
39 46Right-handed alpha
Helix 15
15
B
47 63Right-handed alpha
Helix 16
16
B
68 84Right-handed alpha
Helix 17
17
B
87 89Right-handed 310
Helix 18
18
B
90 107Right-handed alpha
Helix 19
19
B
112 121Right-handed alpha
Helix 20
20
B
125 140Right-handed alpha
Helix 21
21
B
148 160Right-handed alpha
Helix 22
22
B
165 184Right-handed alpha
Helix 23
23
B
184 189Right-handed alpha
Helix 24
24
B
191 205Right-handed alpha
Helix 25
25
B
208 222Right-handed alpha
Helix 26
26
B
225 243Right-handed alpha
Helix 27
27
B
246 251Right-handed alpha
Helix 28
28
C
45 56Right-handed alpha
Helix 29
29
C
88 93Right-handed alpha
Helix 30
30
C
100 120Right-handed alpha
Helix 31
31
C
129 131Right-handed 310
Helix 32
32
C
158 162Right-handed 310
Helix 33
33
C
165 169Right-handed 310
Helix 34
34
C
170 175Right-handed alpha
Helix 35
35
C
182 198Right-handed alpha
Helix 36
36
C
207 220Right-handed alpha
Helix 37
37
C
229 233Right-handed 310
Helix 38
38
C
256 267Right-handed alpha
Helix 39
39
C
276 281Right-handed alpha
Helix 40
40
C
282 287Right-handed 310
Helix 41
42
D
16 36Right-handed alpha
Helix 42
43
D
40 46Right-handed alpha
Helix 43
44
D
46 63Right-handed alpha
Helix 44
45
D
68 84Right-handed alpha
Helix 45
46
D
87 89Right-handed 310
Helix 46
47
D
90 107Right-handed alpha
Helix 47
48
D
112 121Right-handed alpha
Helix 48
49
D
125 140Right-handed alpha
Helix 49
50
D
148 160Right-handed alpha
Helix 50
51
D
163 165Right-handed 310
Helix 51
52
D
166 184Right-handed alpha
Helix 52
53
D
184 189Right-handed alpha
Helix 53
54
D
191 205Right-handed alpha
Helix 54
55
D
208 222Right-handed alpha
Helix 55
56
D
225 243Right-handed alpha
Helix 56
57
D
246 251Right-handed alpha
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There are 6 sheets in PDB entry 1F5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 21first strand
Strand 2
A
30 36anti-parallel
Strand 3
A
75 81anti-parallel
Strand 4
A
66 72anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
Strand 3
A
154 155anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 36first strand
Strand 2
C
75 81anti-parallel
Strand 3
C
66 72anti-parallel
Strand 4
C
85 86first strand
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
133 135anti-parallel
Strand 2
C
141 143anti-parallel
Strand 3
C
123 124first strand
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
150 151anti-parallel
Strand 2
C
154 155anti-parallel
Strand 3
B
0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il